Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5486
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   4.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   5.4  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   7.1  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   7.1  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   7.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   9.4  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   9.4  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 415 SNCVQNINLLKVYAQILLQVDVSTTVT*PKDACAVLS 525
           S+ +  INL K + +++L   V  T+  P D C + S
Sbjct: 46  SDGIHIINLGKTWEKLVLAARVIATIENPADVCVISS 82


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 261  TGLSLKGIENICPSRSNVPLNLPSEQNRDPRRRSGE 368
            + +   G++ + PS+ +   NLPS Q   P +RSG+
Sbjct: 1396 SNMEFTGLKPLSPSKIS---NLPSSQPGSPSKRSGK 1428


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 415 SNCVQNINLLKVYAQILLQVDVSTTVT*PKDACAV 519
           S+ V  +NL K + +++L   V  T+  P D C V
Sbjct: 45  SDGVHILNLGKTWEKLVLAARVIATIENPADVCVV 79


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 128 ITSGFRLHYVYLLVFCWF 181
           I S  +LH V + +FCWF
Sbjct: 235 ICSRTKLHLVQVCLFCWF 252


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 270 SLKGIENICPSRSNVPLNLPSEQNRDPRRRSGEKLSGLSMG 392
           SLK +E + P R +V + +PSE+   PR  S    S  + G
Sbjct: 493 SLKQLE-VYPIRHSVSIEMPSEKLLSPRLYSSSTPSSPTKG 532


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 400 YLVNVSNCVQNINLLKVYAQILLQVDVSTTVT*PKDACAVLSIN 531
           Y V+ S  ++  +  KV+     Q+DV +T+  P  A +++++N
Sbjct: 43  YRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLIADSLVNMN 86


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 289 FSIPFRLSPVSSPTAQGEARIVPRGFLKLSMWESIPKPAK 170
           F +   LSP SS   Q   ++VP+  L+ S+ E   K A+
Sbjct: 796 FQLDDLLSPSSSNLKQQIQKVVPQNSLEFSVGEKEKKAAE 835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,754
Number of Sequences: 5004
Number of extensions: 42155
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)