Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5486
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1302 - 32482764-32483447,32483546-32484109                       31   0.58 
03_02_0128 - 5781932-5782123,5782296-5782377,5782452-5782779,578...    31   0.77 
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191...    29   1.8  
02_04_0308 - 21914924-21914975,21915031-21915211,21915413-21915695     27   9.5  
01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285           27   9.5  

>04_04_1302 - 32482764-32483447,32483546-32484109
          Length = 415

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 189 DSHILSLRKPLGTILAS-P*AVGELTGLSLKGIENICPSRSNVPLNLPSEQNRDPRRRSG 365
           DS + SLR  LG  LAS     G+L  L   G   I  S S+    + +E + D RR +G
Sbjct: 26  DSVVRSLRSSLGATLASFAPLAGKLVYLEGTGDVAIACSASDAVKFVAAESDADVRRLAG 85

Query: 366 EKLSGLS 386
           ++L  L+
Sbjct: 86  DELHDLA 92


>03_02_0128 -
           5781932-5782123,5782296-5782377,5782452-5782779,
           5782870-5783124,5783495-5783583,5783967-5783992
          Length = 323

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 265 PVSSPTAQGEARIVPRGFLKLSMWESIPKPAKN 167
           PV SP  +GE+   P G  K+S W S  +PA++
Sbjct: 86  PVQSPVKRGESMKKPTGGSKISRWFSGKEPAED 118


>02_04_0231 +
           21117887-21117935,21118710-21118825,21119049-21119144,
           21119276-21119332,21119547-21119699,21119801-21119885,
           21120022-21120139,21120278-21120442,21120795-21120914,
           21121006-21121081,21121247-21121418,21121574-21122049,
           21122130-21122320,21124348-21124583,21125799-21125959
          Length = 756

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 325 RFSGTLLLLGQMFSIPFRLSPVSSPTAQ-GEARIVPRGFLKLSMWESIPKPAKN 167
           RFSGT++ +G M + P+  S   S   Q  E  +VPR   ++S WE  P    N
Sbjct: 320 RFSGTIIGVGSMSTSPWANSDWRSLKVQWDEPSVVPRPD-RVSPWELEPLAVSN 372


>02_04_0308 - 21914924-21914975,21915031-21915211,21915413-21915695
          Length = 171

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 383 QPTKFLARSSPWIPILFRW*IQ 318
           +P   L  + PW+ +LFRW +Q
Sbjct: 9   KPHALLCETYPWLSLLFRWDMQ 30


>01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285
          Length = 321

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 400 SDQPIDNPLSFSPDLLRGSRFCSDGRFSGTL 308
           ++ P+D+P   S    R SR  S  RFSG L
Sbjct: 48  NNSPLDSPSHHSSSFGRHSRVSSASRFSGNL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,076
Number of Sequences: 37544
Number of extensions: 260854
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)