Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5485
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891...    31   0.48 
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997...    27   7.9  

>03_05_0741 +
           27287414-27287479,27287887-27287946,27288949-27289112,
           27289158-27289241,27290115-27290178,27291181-27291334,
           27291605-27291675,27292138-27292242,27292734-27292826,
           27293672-27293746,27294114-27294199,27294293-27294499,
           27294585-27294684,27294765-27294835,27294960-27295041,
           27295920-27296078,27296480-27296533,27296775-27296817,
           27297630-27297712,27298569-27298631,27298720-27298794,
           27299620-27299745,27300267-27300499,27300611-27300655,
           27300953-27301019,27302095-27302166,27302276-27302520,
           27302598-27302655,27302743-27302910,27303224-27303298,
           27303412-27303669
          Length = 1101

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 223 ISCWLISQTIYLIIIYNHFFLLIVKHSLILEMPIFIYIMNTSDID*IKKMSTCYLFMTNI 402
           + C  + Q +  +  +  F ++I    +ILE PI +Y+M T  ID +  +   Y F+   
Sbjct: 23  VFCSPMEQILERLRAFGEFEIIIFGDKVILEDPIEMYVMTTQVIDNLIIVLFKYRFIHTT 82

Query: 403 NSIFY 417
           + +F+
Sbjct: 83  SVVFF 87


>07_03_1226 -
           24998276-24998375,24998728-24998849,24998936-24999702,
           25000447-25000618
          Length = 386

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 482 YEMKCITIELRNSILWLRII 541
           Y  KC TIE RN I+W+ ++
Sbjct: 339 YGYKCQTIEARNGIIWVWLL 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,176
Number of Sequences: 37544
Number of extensions: 199455
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)