Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5485
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    28   4.1  
AL132877-18|CAC70116.1|  362|Caenorhabditis elegans Hypothetical...    28   4.1  
AL032643-7|CAA21659.2|  362|Caenorhabditis elegans Hypothetical ...    28   4.1  
AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 529 PQNRVTQFNSNAFHFIQRSRL 467
           PQ+  T  NSN FHFIQ+ R+
Sbjct: 683 PQSSQTIRNSNFFHFIQKPRI 703


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 529 PQNRVTQFNSNAFHFIQRSRL 467
           PQ+  T  NSN FHFIQ+ R+
Sbjct: 548 PQSSQTIRNSNFFHFIQKPRI 568


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 529 PQNRVTQFNSNAFHFIQRSRL 467
           PQ+  T  NSN FHFIQ+ R+
Sbjct: 683 PQSSQTIRNSNFFHFIQKPRI 703


>AL132877-18|CAC70116.1|  362|Caenorhabditis elegans Hypothetical
           protein Y54E5A.1 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 208 VIFDTISCWLISQTIYLIIIYNHFFL-LIVKHSLIL 312
           VIF    CWL+    +++II   +F   I+ H++ L
Sbjct: 51  VIFQIFMCWLLQDADWILIILEAYFCGGIINHAMTL 86


>AL032643-7|CAA21659.2|  362|Caenorhabditis elegans Hypothetical
           protein Y54E5A.1 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 208 VIFDTISCWLISQTIYLIIIYNHFFL-LIVKHSLIL 312
           VIF    CWL+    +++II   +F   I+ H++ L
Sbjct: 51  VIFQIFMCWLLQDADWILIILEAYFCGGIINHAMTL 86


>AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical
           protein Y37A1B.10 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/66 (21%), Positives = 35/66 (53%)
 Frame = +1

Query: 244 QTIYLIIIYNHFFLLIVKHSLILEMPIFIYIMNTSDID*IKKMSTCYLFMTNINSIFYIL 423
           +++ ++ I   F ++    S I+    F Y   +S I  +K +   ++ ++ +N+I + +
Sbjct: 284 KSVKMVAIMTIFSMIAESPSGIIHTYQFFYYDYSSIITCVKSLDKLFINLSILNAIVHCV 343

Query: 424 LVFRIS 441
           + FR+S
Sbjct: 344 ISFRVS 349


>AC006605-3|AAK85442.1|  933|Caenorhabditis elegans Hypothetical
           protein C07H6.4 protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 419 SYWYSEFPINELSTRGKTRSLYEMKCI 499
           S+W   +PINEL      + LY M C+
Sbjct: 438 SWWIPPYPINELRD-AMPKELYHMNCL 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,420
Number of Sequences: 27780
Number of extensions: 216870
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)