Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5485
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.53 
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        25   0.53 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 TISCWLISQTIYLIIIYNHFFLLI 291
           TIS W ++ T YL+I ++  F L+
Sbjct: 283 TISLWFMAWTPYLVINFSGIFNLV 306


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 TISCWLISQTIYLIIIYNHFFLLI 291
           TIS W ++ T YL+I ++  F L+
Sbjct: 33  TISLWFMAWTPYLVINFSGIFNLV 56


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 INSIFYILLVFRISN**IIDAWEDE 474
           I+SIF IL++F  SN  I    +DE
Sbjct: 10  IHSIFLILIIFIYSNETIAQVTDDE 34


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 INSIFYILLVFRISN**IIDAWEDE 474
           I+SIF IL++F  SN  I    +DE
Sbjct: 10  IHSIFLILIIFIYSNETIAQVTDDE 34


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  KYTEFGYELLLQYLYRN*M 100
           KY EFG+E+ L + Y N M
Sbjct: 521 KYDEFGHEVDLVHNYMNFM 539


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  KYTEFGYELLLQYLYRN*M 100
           KY EFG+E+ L + Y N M
Sbjct: 521 KYDEFGHEVDLVHNYMNFM 539


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  KYTEFGYELLLQYLYRN*M 100
           KY EFG+E+ L + Y N M
Sbjct: 147 KYDEFGHEVDLVHNYMNFM 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,971
Number of Sequences: 438
Number of extensions: 3039
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)