Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5484
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    30   0.44 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.1  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    27   4.1  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    27   4.1  
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    25   9.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.4  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -1

Query: 721 FWKQYCKVAPQLQKNYILRPPKSKVHYL*KTESGHLKHLRFKKKS 587
           +WK+  +V+ +++ +YI+ P +++   + +  +G +  L+FK  S
Sbjct: 59  YWKERARVSREVEDDYIIFPEEAEFIKIDECTTGRVYALKFKSSS 103


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 631 TESGHLKHLRFKKKSTDQRQSSFTNILLNCCFCKKKQGN 515
           T  GH  HL  +    D    +F  +L NC    K+  N
Sbjct: 151 TFKGHKNHLENRSFFHDSESDNFKVVLSNCAINSKEDNN 189


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 393 TNHYDFYSSFFFLQNITSQMLVQILEHW 310
           T H+ F SSF  + N TS +L Q    W
Sbjct: 251 TEHFGFLSSFLSVDNPTSSILTQQRLGW 278


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 535 CKKKQGN*KLKYVAILTNQNFYFENRINMQ 446
           CK       L+Y  +L +QNF F  R+N+Q
Sbjct: 156 CKNTGRRGTLEYQLLLDDQNFTFTPRLNVQ 185


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 697 RPYNTASRKLVDFFHNLPKKFFGT 768
           RP+  +      F HNLP K FG+
Sbjct: 74  RPHGNSGAVRARFVHNLPAKTFGS 97


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 191  SHARQ*RGITLRNPIQLHPNMI*YSGHKILNVFYSVPIIESLHATIKSQSWST*RG*DLY 12
            SH     GI+L N   L P+    S  + ++VF  +P+IESL A +    +   R  D+ 
Sbjct: 1052 SHFLDPHGISLYNQPLLLPSND-DSVRRAISVFDRIPVIESLKAGLVYVGYQQRREADIL 1110

Query: 11   EN 6
             N
Sbjct: 1111 AN 1112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,965
Number of Sequences: 5004
Number of extensions: 70534
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)