Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5484
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-23|CAE18016.2|   66|Caenorhabditis elegans Hypothetical...    29   3.8  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   5.0  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    28   8.8  
AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine re...    28   8.8  

>AL117207-23|CAE18016.2|   66|Caenorhabditis elegans Hypothetical
           protein Y60A3A.23 protein.
          Length = 66

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 410 YATSYLQIIMIFTLLFFSFKISHHKC 333
           ++T  L + +IFT++F  F+IS  KC
Sbjct: 21  FSTGSLLLTLIFTVMFIYFRISMRKC 46


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 532 KKKQGN*KLKYVAILTNQNFYFENRINMQKIFLVSGNIRMNMLLHIYKS 386
           +K  G  KLK++ +L  +N  FE   +M  +F ++G   +++   +YK+
Sbjct: 382 RKLDGIFKLKHLKVLWMRNLQFECSSDMLDLFKLTGLTALDVSRDVYKT 430


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 569 TLPLVCTFFFKPKMF*MSGFRFL*IMHFRFGRS*NVIFLQLGCDLTILLP 718
           T+PL+  FFF  + F ++   +  I +F + R   +IFL L     I  P
Sbjct: 77  TIPLIREFFFNYQSFYIAAASYNSIYYFLYIRCTGIIFLSLQRYFVICCP 126


>AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 66 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 725 WWIFFIICRKNFLAQFLKLVNY 790
           W I+F++C   FLA F+ + N+
Sbjct: 12  WPIYFLLCSSLFLAMFILIYNF 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,455
Number of Sequences: 27780
Number of extensions: 403422
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)