Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5482
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 350 1e-97
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 203 2e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 186 3e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 144 9e-36
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 107 2e-24
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 105 6e-24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 97 3e-21
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 55 1e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.006
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.096
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.17
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.39
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.68
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 28 1.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 2.7
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.8
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 6.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 350 bits (861), Expect = 1e-97
Identities = 159/171 (92%), Positives = 166/171 (97%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 275
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 276 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 455
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 456 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 608
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALP
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALP 172
Score = 39.5 bits (88), Expect = 5e-04
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +2
Query: 605 PHAIXXXXXXXXXXXXXXMKILTERGYSFTTPAEREIV 718
PHAI MKIL ERGY+F+T AEREIV
Sbjct: 172 PHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIV 209
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 203 bits (495), Expect = 2e-53
Identities = 89/167 (53%), Positives = 125/167 (74%), Gaps = 1/167 (0%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 293
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 294 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 470
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 471 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPT 611
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P+
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPS 178
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 186 bits (453), Expect = 3e-48
Identities = 86/170 (50%), Positives = 122/170 (71%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 275
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 276 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 455
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 456 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 605
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 144 bits (350), Expect = 9e-36
Identities = 84/208 (40%), Positives = 117/208 (56%), Gaps = 32/208 (15%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 242
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 243 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 401
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 402 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 557
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 558 GDGVSHTVPIYEGYALPTPSCVWT*PVA 641
GDGV+H +P+ EGY + S + T P+A
Sbjct: 187 GDGVTHIIPVAEGYVI--GSSIKTMPLA 212
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 107 bits (257), Expect = 2e-24
Identities = 60/169 (35%), Positives = 91/169 (53%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 278
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 279 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 458
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 459 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 605
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 105 bits (252), Expect = 6e-24
Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 293
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 294 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 470
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 471 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 596
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 96.7 bits (230), Expect = 3e-21
Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 278
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 279 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 452
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 453 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 596
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDG 169
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.8 bits (126), Expect = 1e-08
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +3
Query: 300 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 467
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 468 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPT 611
P +A + ++ LYA G G+V+D G + PI +G + T
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFT 219
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.9 bits (79), Expect = 0.006
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 293
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 294 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 461
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 462 FETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPIYE 593
FE F A A L + G T +V+DSG +H +P+ +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVID 175
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.096
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 360 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 503
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 159 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 302
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 505 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPR 612
PC+ + PPV+C TP P C K H P+
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHPQ 656
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.39
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 256 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 95
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 460 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHP 618
C+ ++ PP T S S P VPP S T +T P P ST T + +P
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSSTDTNSNP 164
Score = 28.7 bits (61), Expect = 0.90
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 460 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHP 618
C+ ++ PP T S S P VPP S T +T P P ST T + P
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSSTDTNSSP 221
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +1
Query: 463 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHPAS 624
S ++ P S S C+ T +PP T P ST T +P PAS
Sbjct: 324 STGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 375
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +1
Query: 463 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHPAS 624
S + P + S C+ T +PP T P ST T +P PAS
Sbjct: 270 STDTNSSPLPTTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 29.1 bits (62), Expect = 0.68
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +1
Query: 469 HSTRPPCTSPSK-PCSRCTRPV-VPPV-SCWTPATVSPTPCPSTKDTHSPRHPASGLNRS 639
HS PP +P C RP VP V S W P ++ P + P P +
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQV 194
Query: 640 RPHRLPH 660
P+RLPH
Sbjct: 195 HPNRLPH 201
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 463 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHPAS 624
S+H + +PS + P+ P ++ W P T PT P + + + P A+
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQPASNAN 296
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 267 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 178
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 484 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTK 594
P T+P P T PV P S P+ P P PS++
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSE 1072
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Frame = +1
Query: 472 STRPPCTSPSK-----PCSRCTRPVVPPVSCWTPATVSP-TPCPSTKDTHSPRHPASGLN 633
ST PP +PS P P VP S P+ +P + PS SP +S +
Sbjct: 1214 STAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMA 1273
Query: 634 RSRPHR 651
+ P R
Sbjct: 1274 SAAPAR 1279
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Frame = +1
Query: 481 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPRHPASGLNRSRP 645
PP +P P P VPP S P A + P P P+ K P + + S P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Query: 646 HRLPHEDPH 672
R PH
Sbjct: 1253 -RSSVPSPH 1260
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +1
Query: 481 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRH 615
PP P + T PV PV+ A P P P+ + H
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAEH 411
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 502 KPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPRHPASGLNRSR 642
KP S+ TRP +P + T P P P + DT R+P+ ++S+
Sbjct: 65 KPSSKATRPYIPSYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSSQSQ 114
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 505 PCSRCTRPVVPPVSCWTPATVSPTPCPST 591
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 490 TSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHPASGLNRSRPHRLPHEDP 669
T PS P + + +PPV ++ +P + HS + S SR +R E+P
Sbjct: 326 TEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEEP 385
Query: 670 HRARVLVHYPRR 705
+ L YP++
Sbjct: 386 LNSYSLHVYPQK 397
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 296 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 117
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 259 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 143
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 402 LLTEAPLNPKANREKMTQIMFETFN 476
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 617 GWRGECVSFVDGHGVGDTVAGVQHDTGGTTGR 522
G RG G G GDTV GG GR
Sbjct: 128 GGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 296 FEGQDTSFALCLISYIRVLLSHTDHHA 216
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 416 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 565
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = +1
Query: 520 TRPVVPPVSCWTPATVSPTPCPSTKDT----HSPRHPASGLNRSRPHRLPHEDP 669
T P S TPA V P P PST T +P + R+ P P P
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSP 886
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 493 SPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPRHPASGLNRSR 642
+P+KP + T + + W + + P KD H P+ S L+ S+
Sbjct: 259 NPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQ 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,514
Number of Sequences: 5004
Number of extensions: 72419
Number of successful extensions: 270
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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