Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5479
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 36 0.008
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.41
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.94
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.9
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 27 3.8
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 5.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.0
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 6.6
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 6.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.8
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 8.8
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -2
Query: 685 DKAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 506
D FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 505 GSALSPLLFSLYINDI 458
GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -3
Query: 570 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 394
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 393 GRRRCFIDDFRPQLPP 346
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.94
Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 10/164 (6%)
Frame = -3
Query: 639 TNCIT-WECQTGSCSSYETTCR-TVRSDIESRERVPGPVTSQPES-RKAPPSPRYYSVCI 469
T+C T TG SS T TV S +P P TS + + P P + C
Sbjct: 227 TSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 286
Query: 468 -STIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQ 292
ST P +P PP++T P P S +G+ +S L
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTS--------STSTPPPPASTSSTGTSSSPLPSTSTS 338
Query: 291 RCSSKGVA----LRTPR*ASL--SRLGASITPPPPFAQSRCSTS 178
+S + TP ++ + ++ TPPPP + S TS
Sbjct: 339 CTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 382
Score = 27.5 bits (58), Expect = 2.2
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 8/187 (4%)
Frame = -3
Query: 612 TGSCSSYETTCR-TVRSDIESRERVPGPVTSQPES-RKAPPSPRYYSVCI-STIYP---- 454
TG SS T TV S +P P TS + + P P + C ST P
Sbjct: 181 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240
Query: 453 -GLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSK 277
L PI + P T S+T + P + S S +T T S+
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTT 299
Query: 276 GVALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRR 97
V P ++ S + TPPPP + S TS P S + +++ T+
Sbjct: 300 PVTPTVPPTSTSS----TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355
Query: 96 YATVPPS 76
TVPP+
Sbjct: 356 TPTVPPT 362
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 334 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 218
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 561 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 406
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 104 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 208
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -3
Query: 273 VALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRY 94
+A R+ ++L + ++ +S S PY P S SP S ++ RY
Sbjct: 248 LAQRSGPTSALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRY 307
Query: 93 ATVPPS 76
A PP+
Sbjct: 308 AKQPPT 313
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 575 VRQVVSYDEHEPVWHSHV 628
+R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = -2
Query: 457 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 287
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 286 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 197
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 517 GVPQGSALSPLLFSLYINDI 458
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 152 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 247
F+L Y L E +W GG + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 612 TGSCSSYETTCRTVRSDIESRERVPGPVTSQ--PESRKAPPSPRYYSV 475
+G S ++ V+S+ R GP S+ P+ PSP +YSV
Sbjct: 2 SGLLPSLSSSFPLVQSEALGMPRTHGPKPSENDPKEPTCSPSPAFYSV 49
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 324 GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 205
GAS+ P R SS P AS++ +I PPP
Sbjct: 889 GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -2
Query: 286 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGVTLDSRMTF 116
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 115 RPHIKTVRDR 86
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,548
Number of Sequences: 5004
Number of extensions: 81021
Number of successful extensions: 282
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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