Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5476
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 34 0.023
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.21
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 29 0.50
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.66
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.66
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 2.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 3.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 3.5
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.1
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 6.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.1
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 8.1
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 8.1
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.9 bits (74), Expect = 0.023
Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
Frame = +2
Query: 56 SSFISPLALLSLTREYFWSTLHHARKNTVSRHMRIPSSATNSFSALTARSP*RPARTGFS 235
SSF S L+ S++ +S+ + +T+S PSS +SFS+ T+ S + + FS
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS--SSFSSTTSSS---KSSSSFS 369
Query: 236 ST-ERVQFTTTATIIGLLIVVTEQRIWNLYQHPDANTNSVFTQIATSAPLATLNAHMVSR 412
ST T+++T+ + + + ++ S + ++SAP+++ H +
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429
Query: 413 NNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRS 574
+ + + ++S++++ L +S+ S+ S Y T+ +SSG S
Sbjct: 430 SRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTVETVSSGSS 483
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 422 PAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRSP-AFPVPGD 598
P + T++ V G + PSV R S+A++ H K LS R P AF GD
Sbjct: 592 PCKRGLGTITTVHKKHGSVDHLPSVKRRRSIANDFHGKPDYNKRSLSIERKPEAFKTKGD 651
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.50
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 242 PSKRSPFSQVSTVSVPLVQRKNWS-HCSGCAYAWT 141
P KR S +S V +P + NW HCS A T
Sbjct: 127 PEKRRSLSDISYVPIPHKEHSNWPVHCSSQAIVTT 161
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.1 bits (62), Expect = 0.66
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +2
Query: 161 PSSATNSFSALTARSP*RPARTGFSSTERVQFTTTATIIGLLIVVTEQRIWNLYQHPDAN 340
P+S+T+SFS +T S P+ + F++T + T++ + V++ + + P +
Sbjct: 192 PASSTSSFSTITNTSM-IPSSSSFTTTTGSPYYNTSSFLP-SSVISSASLSSSSVLPTSI 249
Query: 341 TNSVFTQIATSAPLATLNAHMVS-RNNFPAPQAWSTMSAVTAATGLISSNPSVTP 502
S T + S+ ++L++ S N + +T + T ++ SN SV P
Sbjct: 250 ITSTSTPVTVSS--SSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIP 302
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 213 LYGERAVSAEKELVALLGMRICLDTVFFRAWWSVLQKYS----RVSESNASGEIKELCTH 46
L+G +S + V + ++ C D + A WS + + + ++++ N E KE+C H
Sbjct: 188 LFGNEIMSKTRAFVMFVSLKHCEDCFHWEAVWSSITRNTDERLKMAQVNCDEE-KEMCNH 246
Query: 45 VY 40
+
Sbjct: 247 FH 248
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +1
Query: 271 YNWAVDCGHRTANLEPLSTPGCEYQFGIYPDSHECSTSYIKCAYGVPEQFPCTP 432
Y VD G NL P S Q G+YP + +Y K P C P
Sbjct: 390 YPTTVDGGSMIPNLYPTSAE----QMGLYPQDSQNKDTYPKSLVNRPSSAVCEP 439
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 571 FPRFPRTWRLSQAHHLRGGSSPVLSPAKKEKCSMIRT*PGENPKIVP 711
+P+FPRT + ++A HL+ + + + A +E+C + R + P IVP
Sbjct: 1223 YPQFPRTTQDNRA-HLQAARN-LWALAVEERCIIPRNQDTKQPCIVP 1267
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 356 TQIATSAPLATLNAHMVSRNNFPAPQAWSTMSAVTAA-TGLISSNPSVTPRLSLASNAHQ 532
+ +ATSAP +S F P ST+ + +A + +SS P +T S H
Sbjct: 274 SSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLT-----HSYVHP 328
Query: 533 KYQRTLHRLSSG 568
Q + LSSG
Sbjct: 329 GPQSHKYSLSSG 340
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 242 PSKRSPFSQVSTVS-VPLVQRKN--WSHCSGCAYAWTPYSSGH 123
PS S F+ + + +P+V +N W G W+PY H
Sbjct: 3 PSANSRFAFIIQRNYIPVVNSQNTRWKRLCGTQSVWSPYKKKH 45
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.1
Identities = 27/120 (22%), Positives = 56/120 (46%)
Frame = +2
Query: 164 SSATNSFSALTARSP*RPARTGFSSTERVQFTTTATIIGLLIVVTEQRIWNLYQHPDANT 343
SS T+S A ++ + A + +ST T++AT L + ++
Sbjct: 142 SSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSS-SLASSSL 200
Query: 344 NSVFTQIATSAPLATLNAHMVSRNNFPAPQAWSTMSAVTAATGLISSNPSVTPRLSLASN 523
NS + ATS+ L++ A + ++ A + ++ ++ TA + ISS S + L+ +++
Sbjct: 201 NSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNS 260
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -1
Query: 315 FQIRCSVTTINSPIIVAVVVNCTLSVEEKPVL 220
F I+C+++ ++SPI V++ +L+V+ K +L
Sbjct: 44 FPIKCTLSLLSSPIRRVQVISDSLNVKGKRLL 75
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 65 ISPLALLSLTREYFWSTLHHARK-NTV 142
I+ L L+S +Y+WS H++ K NT+
Sbjct: 243 ITMLRLVSFNMDYYWSLKHNSEKLNTL 269
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 377 PLATLNAHMVSRNNFPAPQAWSTMSAVTAATGLISSNPSVT 499
P++ N +S+N + AP ST S + L ++ PSV+
Sbjct: 118 PVSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQPSVS 158
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +2
Query: 443 TMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRSPAFPVP 592
T A + LI P + PR S + T LSS SP FP P
Sbjct: 344 THIAPASEMSLIPEKPRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPP 393
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 564 LAVPPLSPYLETVTGSSPAWRVKPRLITCEKGKVFDDQN 680
+ +PPL +T+ SP +R+K TC D+ +
Sbjct: 199 VTLPPLDIVEKTLEAPSPNFRIKRVTFTCSSNSSDDEMD 237
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.1
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Frame = +2
Query: 311 WNLYQHPDANTNSVFTQ-------IATSAPLATLNAHMVSRNNFPAPQAWSTMSAVTAAT 469
W + +H + NT +F I T P ++++ S + +PQ S + +T
Sbjct: 43 WWIGRHINTNTQGIFPSNFVHCLDIPTVRPGSSMSRTSASSFRYSSPQKSSIDTPIT--- 99
Query: 470 GLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRS 574
SS+ +TP L +SNA K R L +S
Sbjct: 100 ---SSDQGLTPDLVGSSNALNKPTRESDSLKHQKS 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,723
Number of Sequences: 5004
Number of extensions: 72888
Number of successful extensions: 224
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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