Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5476
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0431 - 23424969-23426081 30 2.1
08_02_1354 - 26337628-26338540,26339638-26339981 29 2.8
02_04_0411 + 22670418-22670499,22670708-22671045 29 3.6
08_02_1463 - 27313436-27314146 29 4.8
05_07_0202 - 28378825-28379433,28382242-28382856 29 4.8
03_02_0465 - 8688454-8689899 29 4.8
05_04_0151 + 18485095-18485766 28 6.4
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 6.4
08_02_1165 + 24830547-24831154,24832048-24832159,24832250-248324... 28 8.4
07_03_0665 + 20470160-20471542 28 8.4
06_03_0941 + 26179682-26182327 28 8.4
05_05_0001 + 21410408-21411391 28 8.4
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 28 8.4
>11_06_0431 - 23424969-23426081
Length = 370
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 499 PEAVVGFKCPSKVPANTPSAKFWPFPRFPRTWRLSQAHHLRGGS 630
P A C S V ++ + K W FPRF L ++ +LR S
Sbjct: 118 PVAAHSRSCSSTVTFSSAATKAWGFPRFVERKTLEESPYLRDDS 161
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 380 LATLNAHMVSRNNFPAP-QAWSTMSAVTAATGLISSNPSVTPRLSLAS 520
L ++ H + + ++ A +A +TMSA+ ATG+ S PS T + A+
Sbjct: 259 LGEISGHKLWKKDYAAAAEAMATMSAMDFATGVDESGPSPTATAAAAA 306
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 484 GGDQASCSCDCAHRRPSLGCRE 419
GGD C C HRR GC E
Sbjct: 97 GGDDGDCGGPCEHRRCEYGCCE 118
>08_02_1463 - 27313436-27314146
Length = 236
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 131 KNTVSRHMRIPSSATNSFSALTARSP*RPA-RTGFSSTERVQF 256
KNT + + SSAT + +A SP RPA RT F T F
Sbjct: 3 KNTTAMGQLMSSSATTAATATGPASPKRPAGRTKFQETRHPVF 45
>05_07_0202 - 28378825-28379433,28382242-28382856
Length = 407
Score = 28.7 bits (61), Expect = 4.8
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +2
Query: 302 QRIWNLYQHPDANTNSVFTQIATSAPLATLNAHMVSRNNFPAPQAWSTMSAVTA-ATGLI 478
+R+ LY+ D T+ + A LATLNA + N P A S+ S T ++
Sbjct: 211 RRLMELYK--DEVTSITVVGHSLGASLATLNAVDIVANGANCPPASSSSSQPPCPVTAIV 268
Query: 479 SSNPSVTPRLSLASNAHQKYQRTLHRLSSGR-SPAFPVPG 595
++P V A+ A R LH ++G P +P G
Sbjct: 269 FASPRVGDGFFKAAFASFPDLRALHVKNAGDVVPMYPPLG 308
>03_02_0465 - 8688454-8689899
Length = 481
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +1
Query: 352 IYPDSHECSTSYIKCAYGVPEQFPCTPGLVYDERSHSCNWPDLLQPFCNPEAVVGFKCPS 531
I+ D S I A P P P V + +HS D L +P ++GF S
Sbjct: 43 IFVDRDPALLSAILSAIRAPSAAPAFPAGVLLDEAHSYGLQDQLLAALSPPPLLGFSA-S 101
Query: 532 KVPANTPSAKFWPFPRFPR 588
+ +P ++ +P PR
Sbjct: 102 RASTLSPPSEPFPTALAPR 120
>05_04_0151 + 18485095-18485766
Length = 223
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 410 RNNFPAPQA-WSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRSPAFP 586
R F P A +S A+TAA+ L S +PS ++SLA A ++ G +
Sbjct: 83 RTYFVLPAARFSCQQALTAAS-LASLSPSPAAKVSLAGGASSPFEYVTG--DDGMALIRV 139
Query: 587 VPGDCHRLITCV 622
+P R ITCV
Sbjct: 140 LPEFIERAITCV 151
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 658 PFSQVIRRGLTLHAGDEPVTVSRYGESGGTA 566
P S V RG LH G P R G GG++
Sbjct: 175 PSSAVQERGRGLHRGASPAAAPRVGAEGGSS 205
>08_02_1165 +
24830547-24831154,24832048-24832159,24832250-24832421,
24832486-24832700,24833922-24833996,24834367-24834390
Length = 401
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 422 PAPQAWSTMSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRSPAFP 586
P+P A ++ SA AA G S +L A Q+YQ HR +G + A P
Sbjct: 77 PSPSASASASASAAAAGHFFSQQQQQQQLQTFLTASQQYQ---HRGGAGAAAAPP 128
>07_03_0665 + 20470160-20471542
Length = 460
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 446 MSAVTAATGLISSNPSVTPRLSLASNAHQKYQRTLHRLSSGRSPAFPVPG 595
M A TG +SSNP+V LS+ + + + + + +S GR+ A+ G
Sbjct: 394 MDRKAAKTGRLSSNPTVNASLSIGPSG-KASKTSCYGMSFGRTRAYNFRG 442
>06_03_0941 + 26179682-26182327
Length = 881
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 501 GVTEGLEEIRPVAAVTALIVDQAWG 427
G E EE+RPV AV ++ AWG
Sbjct: 648 GTAEAEEELRPVLAVHGFMMFVAWG 672
>05_05_0001 + 21410408-21411391
Length = 327
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Frame = -3
Query: 319 EVPNSLFCDHNQ----QPNYSCSGC 257
E PN+ FC +N QP Y C GC
Sbjct: 44 ESPNTKFCYYNNYSLSQPRYFCKGC 68
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 137 YSSGHGGACSRSIPALAKATQAA 69
Y +G+GGA S S+P + +A AA
Sbjct: 323 YYTGNGGASSTSLPLITRAAMAA 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,835,984
Number of Sequences: 37544
Number of extensions: 558982
Number of successful extensions: 1888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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