Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5475
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         35   0.038
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575...    29   3.3  
08_01_0021 + 161613-162236                                             27   7.7  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 172 HASNRNASLLHGRNRQGGGTYPRGVTSGPTISRM 71
           HA++    LL GR R GGG + RG+   P +SRM
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRM 315


>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
            27757626-27758249,27759048-27759596,27759665-27760372,
            27760449-27760658,27761266-27761421,27761524-27761664,
            27762015-27762101,27762209-27762309,27763071-27763293,
            27763384-27763548,27763621-27763713,27763801-27764292,
            27764729-27764805,27765184-27765681,27765818-27766046
          Length = 1855

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 139  GRNRQGGGTYPRGVTSGPTI 80
            GR+R  GG  PRG++S P I
Sbjct: 1626 GRSRSRGGKVPRGISSSPKI 1645


>08_01_0021 + 161613-162236
          Length = 207

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 491 AIPIAWYILPSIVLNKPGVSKTSQVESVSSTSR*CVAGIAYY 366
           AIP +++  PS++   P +  T+   +  STS   + G AYY
Sbjct: 150 AIPASFFSPPSLISPVPFLGATTTSSAAPSTSPSPMGGSAYY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,164
Number of Sequences: 37544
Number of extensions: 360888
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)