Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5475
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-7|CAA97428.1|  416|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AY204176-1|AAO39180.1|  409|Caenorhabditis elegans nuclear recep...    28   5.2  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z73103-7|CAA97428.1|  416|Caenorhabditis elegans Hypothetical
           protein C08F8.8 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 282 AVSSSTHQSNKKRTLMCINQFFFIPTYSVV 371
           ++ + TH++   R + CIN    IPT S++
Sbjct: 254 SIQNFTHRTEPTRYIQCINAIAAIPTTSII 283


>AY204176-1|AAO39180.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-67 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 282 AVSSSTHQSNKKRTLMCINQFFFIPTYSVV 371
           ++ + TH++   R + CIN    IPT S++
Sbjct: 247 SIQNFTHRTEPTRYIQCINAIAAIPTTSII 276


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 381 SYALTGG*AHGLNLRGFANTRLIKNNAWQN 470
           S  + G    G+ +R  AN R+IKN  W N
Sbjct: 887 SNEINGNTLTGVQIRTGANPRVIKNRIWNN 916


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,306
Number of Sequences: 27780
Number of extensions: 294911
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)