Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5474
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626...    29   2.1  
04_04_0890 + 29122442-29122805,29122965-29123119,29123238-291233...    29   2.8  

>07_01_0795 -
           6257985-6258149,6258276-6258380,6259196-6259328,
           6260225-6260289,6260569-6261642,6262328-6262433,
           6262872-6263044,6263352-6263765
          Length = 744

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 334 WKQSREIIAYLDGSLNSVTV*T 269
           WK + E+I YLD SL+S++V T
Sbjct: 615 WKTASEMIEYLDSSLSSISVGT 636


>04_04_0890 +
           29122442-29122805,29122965-29123119,29123238-29123304,
           29123401-29123452,29124047-29124099,29126158-29126513,
           29126633-29126713
          Length = 375

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 122 QAGTNFSNEIRTQPSCRIPCSPGDPTS 42
           Q G N    I  +PS R+ C+PG P+S
Sbjct: 339 QVGNNSGLLITDRPSTRVRCAPGGPSS 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,177
Number of Sequences: 37544
Number of extensions: 289730
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)