Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5474
(590 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC106040-1|AAI06041.1| 135|Homo sapiens MSTP150 protein. 30 7.0
BC101840-1|AAI01841.1| 135|Homo sapiens MSTP150 protein. 30 7.0
BC101838-1|AAI01839.1| 135|Homo sapiens MSTP150 protein. 30 7.0
AK125286-1|BAC86114.1| 135|Homo sapiens protein ( Homo sapiens ... 30 7.0
BC105640-1|AAI05641.1| 797|Homo sapiens protocadherin beta 9 pr... 29 9.3
BC105636-1|AAI05637.1| 797|Homo sapiens protocadherin beta 9 pr... 29 9.3
BC103494-1|AAI03495.1| 796|Homo sapiens PCDHB9 protein protein. 29 9.3
BC100672-1|AAI00673.1| 797|Homo sapiens protocadherin beta 9 pr... 29 9.3
AF282973-3|AAG10032.1| 536|Homo sapiens protocadherin-beta9 pro... 29 9.3
AF217749-1|AAF81913.1| 797|Homo sapiens protocadherin beta 9 pr... 29 9.3
AF152502-1|AAD43763.2| 797|Homo sapiens protocadherin beta 9 pr... 29 9.3
AB208959-1|BAD92196.1| 716|Homo sapiens protocadherin beta 9 pr... 29 9.3
>BC106040-1|AAI06041.1| 135|Homo sapiens MSTP150 protein.
Length = 135
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 80 SCRIPCSPGDP 48
SC+IPCSPGDP
Sbjct: 105 SCQIPCSPGDP 115
>BC101840-1|AAI01841.1| 135|Homo sapiens MSTP150 protein.
Length = 135
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 80 SCRIPCSPGDP 48
SC+IPCSPGDP
Sbjct: 105 SCQIPCSPGDP 115
>BC101838-1|AAI01839.1| 135|Homo sapiens MSTP150 protein.
Length = 135
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 80 SCRIPCSPGDP 48
SC+IPCSPGDP
Sbjct: 105 SCQIPCSPGDP 115
>AK125286-1|BAC86114.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ43296 fis, clone NB9N41000340. ).
Length = 135
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 80 SCRIPCSPGDP 48
SC+IPCSPGDP
Sbjct: 105 SCQIPCSPGDP 115
>BC105640-1|AAI05641.1| 797|Homo sapiens protocadherin beta 9
protein.
Length = 797
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 284 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 322
>BC105636-1|AAI05637.1| 797|Homo sapiens protocadherin beta 9
protein.
Length = 797
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 284 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 322
>BC103494-1|AAI03495.1| 796|Homo sapiens PCDHB9 protein protein.
Length = 796
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 283 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 321
>BC100672-1|AAI00673.1| 797|Homo sapiens protocadherin beta 9
protein.
Length = 797
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 284 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 322
>AF282973-3|AAG10032.1| 536|Homo sapiens protocadherin-beta9
protein.
Length = 536
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 284 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 322
>AF217749-1|AAF81913.1| 797|Homo sapiens protocadherin beta 9
protein.
Length = 797
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 284 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 322
>AF152502-1|AAD43763.2| 797|Homo sapiens protocadherin beta 9
protein.
Length = 797
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 284 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 322
>AB208959-1|BAD92196.1| 716|Homo sapiens protocadherin beta 9
precursor variant protein.
Length = 716
Score = 29.5 bits (63), Expect = 9.3
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 444 STKELITTFLLLKVSNKIFLSIKLRYTLIN--KIKLQAL 334
++++++TTF + S +IFL L Y L+N KI +QA+
Sbjct: 203 ASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAM 241
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,566,465
Number of Sequences: 237096
Number of extensions: 1600882
Number of successful extensions: 3511
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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