Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5474
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   4.3  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 589  LVPSPMDPSKSRGRANPLPTKNN 521
            ++P P  P  S  + NPLPT NN
Sbjct: 1388 ILPPPPPPLPSEEKKNPLPTANN 1410


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 344 SLILFINVYLSFIDRNILFETLRRRKVVISSLVDNVTQLLYSIIDL 481
           SL LF++V++S + RN    T+    + ++ L+D +     SII +
Sbjct: 288 SLTLFLSVFVSLLQRNGRTATVCPSSLTLTKLIDVIFIFPRSIISI 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,823
Number of Sequences: 27780
Number of extensions: 252258
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)