Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5473
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 192 2e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 110 1e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 6e-22
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 7e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 8e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 45 8e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.19
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.75
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.3
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.3
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 27 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 192 bits (469), Expect = 2e-50
Identities = 85/95 (89%), Positives = 91/95 (95%)
Frame = +1
Query: 97 DEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 276
+E++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 277 RGILTLKYPIEHGIVTNWDDMEKIWDYTFYNELGV 381
RGILTLKYPIEHGIV NWDDMEKIW +TFYNEL V
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV 96
Score = 84.2 bits (199), Expect = 1e-17
Identities = 39/50 (78%), Positives = 42/50 (84%)
Frame = +2
Query: 377 VCPEEHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLYAS 526
V PEEHP LLTE LNPK++REKMTQI+FETFN PA YV IQAVL LYAS
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYAS 145
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 110 bits (265), Expect = 1e-25
Identities = 46/86 (53%), Positives = 63/86 (73%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 294
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 295 KYPIEHGIVTNWDDMEKIWDYTFYNE 372
+ PIE GI+ NW DME+IW Y + ++
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQ 97
Score = 52.4 bits (120), Expect = 4e-08
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +2
Query: 383 PEEHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLYAS 526
PEEHP+LLTE L ++EK+ + +ET N PA+ +Q VL LYAS
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 98.3 bits (234), Expect = 6e-22
Identities = 46/97 (47%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Frame = +1
Query: 109 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 282
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 283 ILTLKYPIEHGIVTNWDDMEKIWDYTFYNELGV-PRG 390
+L +KYP+E+GI+ ++++M ++WDYTF+ +L + PRG
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100
Score = 52.4 bits (120), Expect = 4e-08
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 383 PEEHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLYA 523
P +LLTE +NP A+REKM + MFE + +YV IQAVL LYA
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 7e-11
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 294
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 295 -KYPIEHGIVTNWDDMEKIWDYTFYNELGVPR 387
+ P E +++NWD ME++ DYTF +LG+ R
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDR 113
Score = 43.2 bits (97), Expect = 2e-05
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 389 EHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLY 520
EHP+ +TE NP R MT+++FE +N P++ GI + Y
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.0 bits (134), Expect = 8e-10
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 243
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 244 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWDYTFYNEL 375
D ++G++A K +L YPI HG + NWD ME+ W + + L
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYL 117
Score = 57.2 bits (132), Expect = 1e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +2
Query: 383 PEEHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLYAS 526
PE+H LLTE LNP +RE +IMFE+FN +Y+ +QAVL L AS
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 47.6 bits (108), Expect = 1e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Frame = +1
Query: 100 EKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 279
++V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 280 GILTLKYPIEHGIVTNWDDMEKIWDYTFYNEL 375
G + +K I +G V NWD +W Y +L
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQL 92
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 383 PEEHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLYAS 526
P EHP+L+TE NP +R K + MFE+ PA Y+ Q +AS
Sbjct: 96 PLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFAS 143
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.8 bits (101), Expect = 8e-06
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +1
Query: 100 EKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 279
E++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 280 GI--LTLKYPIEHGIVTNWDDMEKIWDYTFYNELGV 381
I + +K +GI+ +W+ W+ +L V
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQV 97
Score = 41.5 bits (93), Expect = 8e-05
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +2
Query: 377 VCPEEHPVLLTEGSLNPKAHREKMTQIMFETFNTPAMYVGIQAVLLLYAS 526
V P E+ +++TE S NP++ R+++ + FE + PA Y+ QAV + +A+
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFAN 146
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 160 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 303
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 30.3 bits (65), Expect = 0.19
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 294
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 295 KYPIEH--GIVTNWDDMEKIWDYTFYN 369
++ H G + +W +WD N
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRN 84
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.75
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 268 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 179
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -2
Query: 257 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATFSS 96
PT S P+ PT+ P P N S P PL+TTN T +S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 297 FKGQNTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 118
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 427 GVKGTLSEQDWVFLGAHPAHCRRYNPKSSPCH 332
G+ TL+ + + A+P + RYNPK +P H
Sbjct: 495 GITTTLNARTSILAAANPLY-GRYNPKVAPIH 525
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 260 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 144
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 220 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 306
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 9.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 127 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 279
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 291 GQNTSFALCLISYIRVLLSHTDHHALMAG 205
G N + + + +I + H DHHA + G
Sbjct: 557 GDNLKYEIASLRWIYISHMHADHHAGVIG 585
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,012
Number of Sequences: 5004
Number of extensions: 53924
Number of successful extensions: 130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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