Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5472
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 32 0.25
02_02_0559 - 11483798-11483988,11484076-11484163,11484288-114844... 30 1.0
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 30 1.4
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 29 1.8
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071... 28 4.1
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 4.1
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 5.5
01_03_0302 + 14790674-14791354 28 5.5
05_06_0261 + 26742302-26742304,26742367-26742789 27 7.2
01_06_0945 + 33217310-33217427,33218820-33219433 27 7.2
10_08_1061 - 22622805-22622961,22623262-22623441,22623482-226234... 27 9.6
07_01_0432 + 3290546-3291911,3291972-3291988 27 9.6
03_06_0236 - 32545561-32546961 27 9.6
01_04_0043 + 15375459-15377606 27 9.6
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 299 TGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDND 424
TGRS G F E+Y +L IA+ ++ + P N+DND
Sbjct: 2349 TGRSLGIFKPSQEDYTVDICTVLQLLIANKRLVLCPSNVDND 2390
>02_02_0559 -
11483798-11483988,11484076-11484163,11484288-11484405,
11484489-11484637,11484921-11484974,11485065-11485160,
11486092-11486242,11486300-11486382,11486577-11486695,
11487111-11487237
Length = 391
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 19 GNQKKNGVQ*SGVFGRPRPLRERGSATSQGCLLEGNPYGQHGRG 150
G + G Q G+ G P+ E A G EG +G HG G
Sbjct: 46 GTHESWGPQVKGLTGAVEPVDEESPAGDDGAAGEGAEHGDHGEG 89
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 127 GSLPEGILGWLRCHAPEEGEGDQTHHFTGHHFFSDSLL 14
G +P ++ ++R H P++ EGD+ + SDS L
Sbjct: 403 GLIPNHVVDFIRSHLPDDNEGDEDELELDMNVLSDSTL 440
>07_03_1562 -
27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -3
Query: 501 FLSLALRASPTERAPSLLNLTLRVNSSLSRFLGLTVI*VSAIGSLKVTSWD 349
F+++ + SPTE A SLLNLT + S+ L S + SL WD
Sbjct: 608 FITIYTKKSPTETAKSLLNLT--IECSIGDLAALE----SLVSSLITALWD 652
>08_02_0975 +
23205590-23205733,23206813-23206894,23207017-23207127,
23207212-23208006,23208338-23208704,23209219-23209300,
23209477-23209532,23209888-23209942
Length = 563
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +3
Query: 9 NTSRESEKKWCPVKWCVWSPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRP 188
NT R KW + ++SP+PS+ + +P R P + GP P
Sbjct: 226 NTGRTLPSKWEDAERWIFSPNPSNAL---GRTSIPQSRRP-----KAKSGPLGPPGRFSE 277
Query: 189 PASSTRSCRY 218
P SS S Y
Sbjct: 278 PYSSVSSSSY 287
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 63 SPSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASST 203
SPSPSS +W P P + AP++ T PPASS+
Sbjct: 73 SPSPSSSSWPPPPPPPPDASQD---------PDLAPREATTPPASSS 110
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 249 WKVSFLKMESSSDMTLYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAG 97
W L ME S ++ +++ A+ DP PD + ++ + ++ LAG
Sbjct: 403 WITLLLTMEFSFNVCIHIWDAILGDPEGPPDTLLRICCAMLILVRRRLLAG 453
>01_03_0302 + 14790674-14791354
Length = 226
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -1
Query: 122 PSRRHPW--LVALPRSRRGRGRPNTPL 48
P+RR+P + +LP+ ++GRG P PL
Sbjct: 63 PARRYPAAPMTSLPQPKKGRGCPRHPL 89
>05_06_0261 + 26742302-26742304,26742367-26742789
Length = 141
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 29 KKMVSSKVVCLVALALFGSVAAQPAKDAFWKGTPMDSMVEEMRSGCAEGSDPTACIKYKV 208
K+++++ V + A + A A KGTPM+S+++ C EG D T +V
Sbjct: 21 KELLTAAVKLSMRKAKAARARFEAAARAAEKGTPMESILDT----CKEGYDSTVSALQEV 76
Query: 209 MSLLDS 226
+D+
Sbjct: 77 QRCIDA 82
>01_06_0945 + 33217310-33217427,33218820-33219433
Length = 243
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 63 SPSPSSGAWQRNQPRMPSGREP----LWTAWSRR*GPAAPKDPTRP 188
SPS SGA + P GR P L A ++ PA+P+ PT P
Sbjct: 47 SPSSPSGARSSSPGTPPRGRRPPPSNLRPAAAQHRSPASPRLPTLP 92
>10_08_1061 -
22622805-22622961,22623262-22623441,22623482-22623489,
22623682-22623845,22623969-22624134
Length = 224
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 171 KDPTRPPASSTRSCRYWTP 227
++ + PP SS SC YW P
Sbjct: 160 ENASEPPESSNPSCAYWLP 178
>07_01_0432 + 3290546-3291911,3291972-3291988
Length = 460
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 85 APEEGEGDQTHHFTGHHFFSDSLLVLI 5
AP G G HHF GH D + L+
Sbjct: 255 APAPGPGSGKHHFDGHSQVKDFIQTLL 281
>03_06_0236 - 32545561-32546961
Length = 466
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 85 APEEGEGDQTHHFTGHHFFSDSLLVLI 5
AP G G HHF GH D + L+
Sbjct: 257 APAPGPGSGKHHFDGHSQVKDFIQTLL 283
>01_04_0043 + 15375459-15377606
Length = 715
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 302 GRSTGDFFDGVENYIQSHDVTFKLPIA-DTQITVS 403
G + +D + Y+Q+HD F + + D +TVS
Sbjct: 357 GTTLASNYDNLREYLQNHDTVFHIIVGLDVLVTVS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,899
Number of Sequences: 37544
Number of extensions: 346969
Number of successful extensions: 1418
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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