Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5472
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr... 36 0.025
AC024214-5|AAF36077.2| 605|Caenorhabditis elegans Hypothetical ... 29 1.6
AC024214-4|AAM97985.2| 603|Caenorhabditis elegans Hypothetical ... 29 1.6
AC024214-3|AAU05554.1| 577|Caenorhabditis elegans Hypothetical ... 29 1.6
Z93385-9|CAB07642.1| 843|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 27 6.5
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 27 6.5
>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
protein F59A3.1 protein.
Length = 1014
Score = 35.5 bits (78), Expect = 0.025
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = +2
Query: 158 SGCAEGSDPTACIKYKVMSLLDSIFKKDTFQISDVVEVTKNGAGNDVTGRSTGDFFDGVE 337
+ C E + C K+ ++ ++++ F + +E+ +G VT R+ +
Sbjct: 336 TNCLEITIEMGCFKFPTDDMMPKLWEEHQFSLLSFLEMGLSGVTGLVTDRNNNTVANATI 395
Query: 338 NYIQSHDVTFK--------LPIADTQITVSPRNLDNDELTLNVKFNKEGAR 466
+ D+ LP D QITVS R L++D T+ + AR
Sbjct: 396 SVDTGKDIISTEAGEYWRLLPPGDHQITVSARGLESDTFTVTIVPGARAAR 446
>AC024214-5|AAF36077.2| 605|Caenorhabditis elegans Hypothetical
protein Y77E11A.7a protein.
Length = 605
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 278 NGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDELTLNVKFNKE 457
+G + V G S F+G E YI + + + ++T P + N E + +VK+N+
Sbjct: 523 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 581
Query: 458 GARS 469
GA++
Sbjct: 582 GAQA 585
>AC024214-4|AAM97985.2| 603|Caenorhabditis elegans Hypothetical
protein Y77E11A.7b protein.
Length = 603
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 278 NGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDELTLNVKFNKE 457
+G + V G S F+G E YI + + + ++T P + N E + +VK+N+
Sbjct: 521 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 579
Query: 458 GARS 469
GA++
Sbjct: 580 GAQA 583
>AC024214-3|AAU05554.1| 577|Caenorhabditis elegans Hypothetical
protein Y77E11A.7c protein.
Length = 577
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 278 NGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVSPRNLDNDELTLNVKFNKE 457
+G + V G S F+G E YI + + + ++T P + N E + +VK+N+
Sbjct: 495 DGGHHHVVGNSGKPRFEG-ERYIFDGEEYVEEEVIAEELTEVPASSANGEQSDDVKYNER 553
Query: 458 GARS 469
GA++
Sbjct: 554 GAQA 557
>Z93385-9|CAB07642.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 12 TSRESEKKWCPVKWCVWSPSPSSGAWQRNQPRMPSGRE 125
T++ES PV VWS +P GA Q PRM + R+
Sbjct: 463 TTQESAPTSAPV---VWSEAPGYGARQECNPRMCTNRQ 497
>Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical
protein C38C6.5 protein.
Length = 443
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -3
Query: 522 PQDGDDDFLSLALRASPTERAPSLLNLTLRVNSSLS 415
P+DGD DFL + L + E + +++ L++ ++++
Sbjct: 272 PKDGDTDFLKVNLLSKTMENLTARISMNLQIGTNIT 307
>Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 12 TSRESEKKWCPVKWCVWSPSPSSGAWQRNQPRMPSGRE 125
T++ES PV VWS +P GA Q PRM + R+
Sbjct: 463 TTQESAPTSAPV---VWSEAPGYGARQECNPRMCTNRQ 497
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 204 LYLMQAVGSDPSAQPDLISSTMLSIGVPFQKASLAGCAATLPKRARATKHTTLLDTIFFL 25
LY + + PS+ P ++T S+G + AGC + R ++ +LLD +L
Sbjct: 288 LYRRKHRPTPPSSTPSTSAATNSSVGHSTKNPFYAGCFKSFFGRLFKSRFPSLLDARGYL 347
Query: 24 IPY 16
P+
Sbjct: 348 DPH 350
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +3
Query: 66 PSPSSGAWQRNQPRMPSGREPLWTAWSRR*GPAAPKDPTRPPASSTRSCRY 218
PS G P P+GR+P S G P P PP SS R RY
Sbjct: 371 PSIGGGVGGGGAPLAPTGRDPYSVGESWANGAGGPGGP--PPVSSDRD-RY 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,301,543
Number of Sequences: 27780
Number of extensions: 256583
Number of successful extensions: 942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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