Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5468
         (556 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59943-1|CAA42568.1|  128|Drosophila melanogaster ubiquitin exte...    28   9.7  
X53059-1|CAA37227.1|  128|Drosophila melanogaster protein ( Frui...    28   9.7  
AY075451-1|AAL68264.1|  128|Drosophila melanogaster RE10554p pro...    28   9.7  
AE014134-712|AAF51034.1|  128|Drosophila melanogaster CG2960-PA ...    28   9.7  

>X59943-1|CAA42568.1|  128|Drosophila melanogaster ubiquitin
           extension protein protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 LVAINGLIVEGFWRILSQ-YRCERFCCSKNY-RQKSEETNTR 512
           ++ + G I+E   RIL+Q Y C++  C K Y R     TN R
Sbjct: 70  VLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCR 111


>X53059-1|CAA37227.1|  128|Drosophila melanogaster protein ( Fruit
           fly mRNA for ubiquitin52-AA extension protein. ).
          Length = 128

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 LVAINGLIVEGFWRILSQ-YRCERFCCSKNY-RQKSEETNTR 512
           ++ + G I+E   RIL+Q Y C++  C K Y R     TN R
Sbjct: 70  VLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCR 111


>AY075451-1|AAL68264.1|  128|Drosophila melanogaster RE10554p
           protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 LVAINGLIVEGFWRILSQ-YRCERFCCSKNY-RQKSEETNTR 512
           ++ + G I+E   RIL+Q Y C++  C K Y R     TN R
Sbjct: 70  VLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCR 111


>AE014134-712|AAF51034.1|  128|Drosophila melanogaster CG2960-PA
           protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 LVAINGLIVEGFWRILSQ-YRCERFCCSKNY-RQKSEETNTR 512
           ++ + G I+E   RIL+Q Y C++  C K Y R     TN R
Sbjct: 70  VLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCR 111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,838,609
Number of Sequences: 53049
Number of extensions: 413303
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)