Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5468
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    27   9.1  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    27   9.1  

>U29612-3|AAA68802.2|  289|Caenorhabditis elegans Hypothetical
           protein C09B8.4 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -3

Query: 353 DVIDCYKRKVVSPLTHTY*S*HNYLFTYSY*TDALFSNKKVVFFFNYGN 207
           ++++  + K++SPL         Y F+Y Y  D +   K+ V+F+++G+
Sbjct: 187 ELVNAVRDKLLSPLVTLLPFLRPYFFSYWYIHDKIELPKRQVYFYSHGD 235


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 168 LLIVHFVFGHK-SFSIHICANRNGDSTLIFDLINSPVFDTVG 46
           ++I+   F  K S +  I    +G  T++F  IN PVFD  G
Sbjct: 158 IVILSTYFAKKRSVATGIAVCGSGIGTMVFSTINGPVFDYFG 199


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 168 LLIVHFVFGHK-SFSIHICANRNGDSTLIFDLINSPVFDTVG 46
           ++I+   F  K S +  I    +G  T++F  IN PVFD  G
Sbjct: 158 IVILSTYFAKKRSVATGIAVCGSGIGTMVFSTINGPVFDYFG 199


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 75  LNQKLMCYLRFCLHKCESKNFYVQRQSEL*VIQTATKHSSLTLNVAII 218
           + Q  +C LR+C    E + F   ++ EL  + T + HS L  N  ++
Sbjct: 334 VTQNRICTLRYCEIMMEKETFQWVKEFELTNVLTKSLHSELQGNPILL 381


>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 111 NRNGDSTLIFDLINSPVFDTV 49
           ++NGD+ LI D I  P+FD V
Sbjct: 774 SKNGDAKLILDSIVPPLFDAV 794


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 75  LNQKLMCYLRFCLHKCESKNFYVQRQSEL*VIQTATKHSSLTLNVAII 218
           + Q  +C LR+C    E + F   ++ EL  + T + HS L  N  ++
Sbjct: 334 VTQNRICTLRYCEIMMEKETFQWVKEFELTNVLTKSLHSELQGNPILL 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511,292
Number of Sequences: 27780
Number of extensions: 225887
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)