Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5466
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    29   4.0  
07_03_0400 + 17719092-17719183,17719616-17719658,17720086-177201...    29   4.0  
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    28   7.0  
05_03_0284 + 11599390-11600007,11600109-11600153,11600343-116005...    28   7.0  

>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 208 QQGVSNIISFCRKTLPGRICDSISS 282
           + G S ++   RKTL G +CDS S+
Sbjct: 567 ESGSSTVLDSARKTLSGSVCDSSSN 591


>07_03_0400 +
           17719092-17719183,17719616-17719658,17720086-17720112,
           17722607-17722706,17722924-17722928
          Length = 88

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = +1

Query: 154 TIE*PQR*VWIIRAARQFQQGVSNIISFCRKTLPGRICDSISSVSTDAFTGKYI 315
           +++ P +   ++R  R+F+  V N++  CR  + G++   +     +   G++I
Sbjct: 19  SVQYPFKIFQLVRMDREFRMVVGNLLQNCRSMMHGKVLLGLEKFGLNQCNGQFI 72


>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -3

Query: 368 KNSLD*CKVL*DFLHTIIIYLPVNASVETDEILSQIRPGKVFL 240
           K S D C++  DFLH +++ L  + +V+T+  +S +R   ++L
Sbjct: 668 KESTDDCRLPYDFLHDVVL-LSEHLNVKTNLFISLLRFSDLYL 709


>05_03_0284 +
           11599390-11600007,11600109-11600153,11600343-11600550,
           11600645-11600726,11601894-11602398
          Length = 485

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 436 GWWYLPCGLPRGPTTS 389
           GWW LPC   RGP  S
Sbjct: 196 GWWNLPCKPHRGPNGS 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,024
Number of Sequences: 37544
Number of extensions: 331210
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)