Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5463
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 36 0.042
05_03_0090 - 8330283-8330831 31 1.2
03_06_0546 - 34646946-34647289,34647542-34647608 30 2.1
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 29 2.8
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 2.8
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 29 3.7
09_04_0523 + 18310695-18311837,18312050-18312109,18312232-183123... 29 4.9
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 29 4.9
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 4.9
01_06_0740 + 31603996-31604820,31605080-31605391 29 4.9
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 28 6.4
12_01_0030 + 262452-263210,263332-263575,263867-264165 28 8.5
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 8.5
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +1
Query: 388 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI 534
GP T +APT PTP PLP RH C R R H PS L+
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68
>05_03_0090 - 8330283-8330831
Length = 182
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 421 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHHFPSQLI*SRRGLP 555
SLPTP L PLP RH P+ CR L H + RR P
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSHRRVSPLQGRRSAP 132
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 188 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 277
SFH E+ CC CCV+ C + C + HL
Sbjct: 79 SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 188 SFHQEE--VCCTCCVYRSCIILCYFSRR 265
SF+ E+ V C+CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 484 CRPCRSHRLHHFPSQLI*SRRGLPPCWRQLTP 579
CRPC SHR + R GLPP L P
Sbjct: 379 CRPCLSHRTGLLHRTRLSHRSGLPPLAAPLAP 410
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 303 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 455
STS+ +P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 456 GATTYTTPFVQTVPIASTASL 518
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>09_04_0523 +
18310695-18311837,18312050-18312109,18312232-18312324,
18312675-18312731,18313321-18313359
Length = 463
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 689 RVPQRCRVRCTKRSAVQNVAGLM 621
R PQ +RC +RS V NV G M
Sbjct: 199 RTPQALSLRCVERSGVVNVGGAM 221
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 391 P*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQLI*SRRGLPPCWRQ 570
P + ++++ +S P Q +P PT P +++ H P+ + RR PP Q
Sbjct: 60 PASPAMISSSSSSLPPQQQRTWQPQPTTFSQANPGHAYQQDHLPA--VAGRRFFPPPAMQ 117
Query: 571 LTPY 582
+ Y
Sbjct: 118 MQYY 121
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 569 CRQHGGRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSD 420
C+ + G P LD D C R +++G + C GS C G +
Sbjct: 301 CQGYEGNPYLDGGCTDINECLRPEKYGCYGDCTNMLGSHTCVCPPGTSGN 350
>01_06_0740 + 31603996-31604820,31605080-31605391
Length = 378
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 554 GRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHGP 387
G D M+CDG+ HG H G + DVG GS AR+ A P
Sbjct: 177 GAAFNDAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 557 GGRPLLDQMSCDGK*CSRCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARSDVAHG 390
GG PL+ + + C++ + G VGS ++ A+ +VGV S+ G+ +D +G
Sbjct: 137 GGSPLMLESLPETSDTRGCEQEVM-PGVVVGSSNRDASSEVGVESERGSDADGRNG 191
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 608 WESTGVSSRYGVSCRQHGGRPLLDQMSCDGK*CSRCD--RHGLHEGCRVGSGS 456
W+S S R+ S + P+ + +C G+ CS CD R LH C GS S
Sbjct: 308 WDSQ--SGRFNKSNSKPICSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHS 358
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 378 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 485
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,830
Number of Sequences: 37544
Number of extensions: 429348
Number of successful extensions: 1486
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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