Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5460
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006632-8|AAK85473.1|  117|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC006632-8|AAK85473.1|  117|Caenorhabditis elegans Hypothetical
           protein F28A10.7 protein.
          Length = 117

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 78  LFYRIICVRVGVEKNIYGCCCTKFR*RTVYGVSNVGFEKEREMCDK 215
           LF  IIC+ V V  ++  CCCT +  RT  G  +   E   ++C++
Sbjct: 61  LFVVIICIIVSVAASVV-CCCTSW--RTGVGQDDPDREHFEDICEE 103


>Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 68  TIFG*MLVIMFFLFYQPYCF 9
           TI    L +MFF FYQPY F
Sbjct: 214 TILKRYLRMMFFAFYQPYLF 233


>Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 68  TIFG*MLVIMFFLFYQPYCF 9
           TI    L +MFF FYQPY F
Sbjct: 214 TILKRYLRMMFFAFYQPYLF 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,776,326
Number of Sequences: 27780
Number of extensions: 208098
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)