Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5459
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373           30   2.2  
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459...    29   2.9  
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836...    29   3.9  
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303     29   5.1  

>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
          Length = 814

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 27  NHST*ECVGSR*PCGNTELLQNGYVG--LACCP*NSQHPPLWDGCYSTVI 170
           N ST  CV +   C        GYVG    C P    +P + DGC   +I
Sbjct: 353 NTSTYACVSTNSSCSRVISTMQGYVGYRCTCLPGYDGNPYIPDGCKGIII 402


>12_02_0661 +
           21644328-21644517,21644697-21644875,21644899-21645922,
           21647108-21647262
          Length = 515

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 540 YSVLSPTIVTCSSNQEKICLNPKAC 614
           +SV+SP +  C    E+I +NP  C
Sbjct: 261 FSVVSPNVQVCKEKDEEIVVNPMKC 285


>03_04_0085 -
           17182662-17182963,17183044-17183101,17183564-17183638,
           17183730-17183864,17183986-17184165,17184315-17184365,
           17184537-17184637,17185562-17185620,17185701-17185816,
           17186668-17186853,17187337-17187399,17187440-17187521,
           17188221-17188312,17189153-17189296,17190056-17190136,
           17190815-17190898,17191465-17191566,17191922-17192017,
           17192239-17192299,17192418-17192521
          Length = 723

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 232 N*ILFNCLNTISIMLLIMLVTAHHII 309
           N +L NC + I IML+I ++  H +I
Sbjct: 434 NAVLLNCYDAIGIMLMIRIIHQHQLI 459


>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
          Length = 462

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 259 TISIMLLIMLVTAHHIITAAPTN 327
           TIS +L  MLV  H  +T APTN
Sbjct: 301 TISTLLWAMLVKNHRTLTCAPTN 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,452
Number of Sequences: 37544
Number of extensions: 297042
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)