Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5458
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   1.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   4.2  
SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc...    25   5.5  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    24   7.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    24   7.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   9.7  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 98  NMDTYRKIWPELATL 142
           N+DT R++WPEL  +
Sbjct: 469 NLDTIRRLWPELGRM 483


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -2

Query: 338 VTSRLFHPSCIIYLRFLACESSSISFKPHLFLLNNCLVGTSS-TPVCGSPAKACIF---L 171
           +T++ FH  CI+ L+      S+   KP +F  +  +      T +C SPA+ C+F   L
Sbjct: 412 ITAKSFH-KCILLLK---TGFSAPLIKPSVFSGSKWVENMRLLTDLCKSPAQKCLFSNLL 467

Query: 170 TASEIDC 150
           TA+   C
Sbjct: 468 TATRKFC 474


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 71  RLTRLIFCYNMDTYRKIWPELATLTRHNLFPKLS 172
           R  R +FC  MD+ +K+   L T T + + P  S
Sbjct: 174 RCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207


>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 46  IYLELNSPTLDEVNFLL-QYGYLSKDLAGVGYTYTSQSISEAVKKMQ 183
           + +E  +PTLD++N +L   G    DL   G T    SI +A+ K Q
Sbjct: 44  LQVETATPTLDQLNIMLSNIGKDKSDLLVAGAT----SIEDALTKYQ 86


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 85  NFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGL 198
           N+   YG+     AG+   Y S  I +AV     F G+
Sbjct: 286 NYFFYYGFSVMQGAGINSPYLSAMILDAVNFGCTFGGM 323


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 89  FCYNMDTYRKIWPELATLTRHNLFPKLSRK 178
           F Y + T  K +   ATL R +L  K +++
Sbjct: 204 FSYKVTTVHKSYQRFATLLRRHLLDKTAKR 233


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 68   LRLTRLIFCYNMDTYRKIWPELATLTRHNLFPKLSRKCRPSQGYHK 205
            L+    +  YN +   +IW ++    + + FP+L +   P Q  +K
Sbjct: 1481 LKFISYLHRYNKNVDLEIWSKIFLGFKPSKFPELCKDINPEQRTYK 1526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,710
Number of Sequences: 5004
Number of extensions: 33313
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)