Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5458
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0940 + 7235801-7236916                                           29   1.0  
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160...    27   4.1  
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729...    27   4.1  
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688           27   5.4  
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719...    27   7.1  
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303     27   7.1  

>06_01_0940 + 7235801-7236916
          Length = 371

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +1

Query: 85  NFLLQYGYLS----KDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 252
           ++L  +GYLS      L+          +  A+K  Q   GL  TG LD  T       R
Sbjct: 67  DYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPR 126

Query: 253 CGLKDI 270
           CG+ D+
Sbjct: 127 CGVADV 132


>10_01_0132 -
           1601421-1601657,1601761-1601922,1602812-1603721,
           1604587-1604651,1604704-1604746,1605086-1605128,
           1605874-1605955,1606270-1606464,1606567-1606721,
           1611207-1611435,1611538-1611693,1612539-1613476,
           1614946-1614967
          Length = 1078

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 43  TIYLELNSPTLDEVNFLLQYGYLSKDLAG 129
           T++L+ NSP L+++   +  GY +KD+ G
Sbjct: 354 TVFLQ-NSPKLEKLRLEIDEGYTAKDIKG 381


>02_05_0226 +
           26971851-26972034,26972734-26972834,26972876-26972978,
           26973335-26973477,26973525-26973605,26973929-26974015,
           26974097-26974239,26974746-26974896,26974973-26975095,
           26975362-26975445,26975531-26975718,26976726-26976900,
           26977008-26977129,26977231-26977310,26977532-26977590,
           26977921-26978075,26978680-26978858,26980050-26980162,
           26980243-26980413,26980552-26980680,26980756-26980856,
           26980942-26981059,26981739-26981818,26983230-26983302,
           26983865-26983950,26984025-26984076,26984221-26984352,
           26984560-26984628,26984912-26985004,26985806-26985901,
           26986710-26986808,26986894-26986986,26987459-26987608,
           26988391-26988549
          Length = 1323

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 31  VQCRTIYLELNSPTLD---EVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAF 189
           V C+ +Y EL + TL    +VNF+L    L K+       +  ++ISEA+K++  F
Sbjct: 148 VGCKLVY-ELFTDTLTSRLKVNFVLGACILKKERKKKWDEHNQEAISEALKQLNEF 202


>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
          Length = 308

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 259 LKDIDEDSHARNRRYIIQEGWNKREVTYR 345
           L+ + EDS ARN  Y ++ G N R++T++
Sbjct: 230 LRFMGEDSEARNFCYSLEVGGNGRKLTWQ 258


>03_02_0296 +
           7191455-7191615,7192031-7192071,7192156-7192741,
           7193307-7193444,7193572-7193728,7193848-7194332,
           7194867-7195086
          Length = 595

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 116 FDKYPYCSKKLTSSSVGEF 60
           +D  P CSKKLT   V +F
Sbjct: 99  YDSKPVCSKKLTKEEVAKF 117


>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
          Length = 462

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 86  IFCYNMDTYRKIWPELATL---TRHNLFPKLSRKCRPSQG 196
           +F  NM TY +IW EL  +    R+    ++   C P  G
Sbjct: 200 VFLINMTTYNRIWSELDAVVASVRNTDIIRMIVNCNPKVG 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,184,607
Number of Sequences: 37544
Number of extensions: 195604
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)