Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5458
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc metallopro... 70 7e-13
AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix metall... 70 7e-13
AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical ... 51 3e-07
AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix metall... 51 3e-07
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 36 0.008
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 32 0.13
Z81502-2|CAB04106.2| 720|Caenorhabditis elegans Hypothetical pr... 30 0.51
AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily a... 29 1.6
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 29 1.6
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 27 4.8
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 27 6.3
Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical pr... 26 8.4
U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein ... 26 8.4
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 26 8.4
>U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc
metalloprotease protein 1 protein.
Length = 521
Score = 69.7 bits (163), Expect = 7e-13
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Frame = +1
Query: 73 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 252
+D FL +YGYL+ +S+S+S+A+K MQ AGL +TG LD T Q+ +R R
Sbjct: 24 VDHTKFLQKYGYLTSG----DNQLSSESLSDALKNMQRMAGLEETGELDERTIQMMERPR 79
Query: 253 CGLKDIDEDSHARNRRYI-IQEGWNKREVTY--RLLNGSSTMSKDRIER 390
CG D+++ +R +RY Q W ++ +TY + + S+ +S D + R
Sbjct: 80 CGHPDVEDHQKSRGKRYAPPQFKWKEKIITYGCKAVGTSTRISLDDLRR 128
>AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 521
Score = 69.7 bits (163), Expect = 7e-13
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Frame = +1
Query: 73 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 252
+D FL +YGYL+ +S+S+S+A+K MQ AGL +TG LD T Q+ +R R
Sbjct: 24 VDHTKFLQKYGYLTSG----DNQLSSESLSDALKNMQRMAGLEETGELDERTIQMMERPR 79
Query: 253 CGLKDIDEDSHARNRRYI-IQEGWNKREVTY--RLLNGSSTMSKDRIER 390
CG D+++ +R +RY Q W ++ +TY + + S+ +S D + R
Sbjct: 80 CGHPDVEDHQKSRGKRYAPPQFKWKEKIITYGCKAVGTSTRISLDDLRR 128
>AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical
protein C31B8.8 protein.
Length = 579
Score = 51.2 bits (117), Expect = 3e-07
Identities = 27/80 (33%), Positives = 42/80 (52%)
Frame = +1
Query: 151 QSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDEDSHARNRRYIIQEGWNKR 330
Q A++K Q FAG+ +TG LD TK RCG+ D + + ++ W+K
Sbjct: 88 QVFKSAIRKFQEFAGIAKTGFLDAATKAKMALSRCGVTDAPLALTSGSSQF----KWSKT 143
Query: 331 EVTYRLLNGSSTMSKDRIER 390
+TY + + SS +SKD + R
Sbjct: 144 RLTYSIESWSSDLSKDDVRR 163
>AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 579
Score = 51.2 bits (117), Expect = 3e-07
Identities = 27/80 (33%), Positives = 42/80 (52%)
Frame = +1
Query: 151 QSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDEDSHARNRRYIIQEGWNKR 330
Q A++K Q FAG+ +TG LD TK RCG+ D + + ++ W+K
Sbjct: 88 QVFKSAIRKFQEFAGIAKTGFLDAATKAKMALSRCGVTDAPLALTSGSSQF----KWSKT 143
Query: 331 EVTYRLLNGSSTMSKDRIER 390
+TY + + SS +SKD + R
Sbjct: 144 RLTYSIESWSSDLSKDDVRR 163
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 36.3 bits (80), Expect = 0.008
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +1
Query: 73 LDEVN-FLLQYGYLSKDLAGVGYTYTSQS---ISEAVKKMQAFAGLPQTGVLDVPTKQLF 240
+DE +L ++GY+ + T S +A+ + Q+ +G +DVPT+
Sbjct: 34 MDEAKVYLFKFGYMIPEPHQNVKTIQEPSEKQTKDALIRFQSAFLYYSSGDVDVPTQAKM 93
Query: 241 KRKRCGLKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRI 384
RC D+D+ +E W K+ +TY+++N +T+S+ +I
Sbjct: 94 NEWRCANNDMDKGQPIPPASK--KELWTKKSLTYKVVNTPNTLSQAQI 139
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 32.3 bits (70), Expect = 0.13
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +1
Query: 97 QYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDE 276
+YGYL G+ ++ + Q +A+ Q + QTG +D T + + RC D+ +
Sbjct: 64 KYGYLK----GIDHS-SPQEFRQALMFFQEVLEVEQTGNVDEMTVEAASKPRCTQTDVRQ 118
Query: 277 DSHARNRRYIIQE--GW---NKREVTYRLLNGSSTMSKDRIE 387
+ R +R+ + + W + + VT + T DR+E
Sbjct: 119 EQTKRTKRFTLSKRAKWAHASGQSVTLKWYISDYTSDIDRLE 160
>Z81502-2|CAB04106.2| 720|Caenorhabditis elegans Hypothetical
protein F14B6.2 protein.
Length = 720
Score = 30.3 bits (65), Expect = 0.51
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 157 ISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDEDSHARNRRYIIQEGWNKREV 336
+SE+ + M L T L T + K+ G+K++ +++H R+++ +++E + +
Sbjct: 404 LSESTRMMWDMDELKYTTFLAPKTTEQTKQVEEGVKEVIQEAHERSQKPMLKETFEEATT 463
Query: 337 -TYRLLNGSSTMSKDRIER 390
T + L G MSKD+ E+
Sbjct: 464 STEKPLPGG--MSKDQWEK 480
>AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform b protein.
Length = 648
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 62 TPLRLTRLIFCYNMDTYRKIWPELATLTRHNLFPKLSRKCRPSQ 193
T +R RL+ N + R +W EL + L KL +C+ Q
Sbjct: 129 TSMRRDRLVGTSNFGSQRSLWCELPEVRAAGLLEKLDDECKLRQ 172
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 62 TPLRLTRLIFCYNMDTYRKIWPELATLTRHNLFPKLSRKCRPSQ 193
T +R RL+ N + R +W EL + L KL +C+ Q
Sbjct: 617 TSMRRDRLVGTSNFGSQRSLWCELPEVRAAGLLEKLDDECKLRQ 660
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical protein
F59F5.6 protein.
Length = 1139
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 103 GYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 261
G S++L G ++ E AFA Q G DVP +QL ++K GL
Sbjct: 1055 GVFSRNLVDSGIHGALIALDETFDA-SAFAYALQIGSQDVPNRQLLEKKFIGL 1106
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 103 GYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 261
G S++L G ++ E AFA Q G DVP +QL ++K GL
Sbjct: 1055 GVFSRNLVDSGIHGALIALDETFDA-SAFAYALQIGSQDVPNRQLLEKKFIGL 1106
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
protein protein12 protein.
Length = 1847
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 296 RFLACESSSISFKPHLFLLNNCLVGTSS 213
R LA S+SI+F+PH F L + +V T+S
Sbjct: 1327 RRLAAASNSINFRPHRFDLTD-IVATNS 1353
>Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical
protein K03B8.2 protein.
Length = 448
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 262 KDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERL 393
KD+DE + + I+ E R+LNG++ SK +I ++
Sbjct: 43 KDVDEFDSNKGKDGIVDGDIMLTEAQLRILNGTAKRSKRQITKI 86
>U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein 1
protein.
Length = 596
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +1
Query: 214 LDVPTKQLFKRKRCGLKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSS 363
+++ + + R C L DI + + I + W + E YR++ G++
Sbjct: 236 VEMGNRAIHARCMCSLADIYRELGESEAKETITKSWARYEDAYRVMRGAN 285
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 202 QTGVLDVPTKQLFKRKRCGLKDIDEDSHARNRRYIIQE--GW---NKREVTYRLLNGSST 366
QTG +D T + + RC D+ ++ R +R+ + + W + + VT + T
Sbjct: 62 QTGNVDEMTVEAASKPRCTQTDVRQEQTKRTKRFTLSKRAKWAHASGQSVTLKWYISDYT 121
Query: 367 MSKDRIE 387
DR+E
Sbjct: 122 SDIDRLE 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,189,124
Number of Sequences: 27780
Number of extensions: 186734
Number of successful extensions: 456
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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