Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5457
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0769 - 5745324-5746970                                           31   0.28 
09_06_0240 + 21797458-21799369,21799636-21799784                       27   6.0  

>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 1   VIRHEGRTCVMRSEVSIHLSYISCPVRSLTYIH*GEEETFVIGRINFLVLXFLKFFICSL 180
           V+RH+G    +   V +HL  I   +++ T+    EE+  V+ R N++VL    +F  +L
Sbjct: 232 VVRHDGDGGALPPYVYLHLEQIHLRLQNHTFC---EEDHRVLDRFNWMVLRSDSYFAVAL 288

Query: 181 VL 186
            L
Sbjct: 289 FL 290


>09_06_0240 + 21797458-21799369,21799636-21799784
          Length = 686

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 140 KFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSDRMTQVRPSCR 6
           K + P+ +V   P+   VKL+ G+DI    +  S  M Q+R + R
Sbjct: 218 KVVEPVKEVEEPPR--QVKLVFGEDIRWAQVPASCSMAQLREAVR 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,419,289
Number of Sequences: 37544
Number of extensions: 127173
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)