Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5456
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   1.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.4  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
 Frame = -2

Query: 613 GSVGK--RSCMSVTGYRGSVCLGHQRSGMGI-GCVRGGVSNRGCMCGISCEWCSM---RS 452
           G VG   R C +  G +     G  RS M    C   G   R C  G+ C  C     RS
Sbjct: 89  GRVGHIARDCRT-NGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS 147

Query: 451 VSCNRCGSGVSRYRSDSFG 395
             C +   G   Y+ +  G
Sbjct: 148 FECQQASDGQLCYKCNQPG 166


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 252 QPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 365
           +P L L  TR+  R PSP +  S   LRPQ  P  P++
Sbjct: 209 EPYLPLSPTRSPARTPSPIRLYSSDALRPQ-SPLSPSV 245


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 288 PRLPSPSQHPSLRPLRPQYLPFHPTL 365
           P    PSQHP +  +  QYLP+   L
Sbjct: 427 PTSSPPSQHPPVGQIPSQYLPYQAGL 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,323
Number of Sequences: 5004
Number of extensions: 21453
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)