Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5456
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 32 0.50
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 31 0.66
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 30 1.5
09_04_0389 + 17239182-17239316,17240246-17240878 29 3.5
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 29 3.5
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 28 6.1
07_01_0037 + 301864-302349 28 6.1
05_07_0220 + 28482589-28483752 28 6.1
10_06_0172 + 11473892-11474896 28 8.1
09_06_0115 + 20944586-20945185 28 8.1
08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802 28 8.1
08_01_1010 - 10215625-10216335,10216372-10216473 28 8.1
02_03_0229 + 16617371-16617970 28 8.1
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 270 PSTRATPRLPSPSQHPSLRPL--RPQYLPFHPTLPRHRMA 383
PS R+ PR P+P PSL+P PQ + PT P + A
Sbjct: 478 PSLRSPPRQPTPPPSPSLQPAFPAPQPVQASPTSPAKQHA 517
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 270 PSTRATPRLPSPSQHPSLRPLRPQYL-PFHPTLP 368
P+T A P PSP P L P+ P++L P P LP
Sbjct: 361 PTTAAAPPPPSPHAQPPLLPVWPRHLAPPPPPLP 394
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 553 GHQRSG-MGIGCVRGGVSNRGCMCGISCEWCSMRSVSCNRCGSG 425
GH +SG G GC GG GC G++ E V CGSG
Sbjct: 817 GHVKSGGCGSGC--GGGCGGGCGGGVAMESSKAGHVKSGGCGSG 858
>09_04_0389 + 17239182-17239316,17240246-17240878
Length = 255
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 228 RHMLQLLIQPTLRLPSTRATPRLPSPSQHPSLRP-LRPQYLP 350
RH++++L R+P A PR P++ RP RP+ +P
Sbjct: 167 RHLVEVLESAKTRVPVLTAAPRRSGPARDELRRPKSRPETIP 208
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 267 LPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRHR 377
LPST T R PSP + P P+R + + PR R
Sbjct: 74 LPSTTTTRRRPSPGRLPRRSPIRARAGSSETSSPRGR 110
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 634 GLFKDGGGSVGKRSCMSVTGYRGSVC--LGHQRSGMGIGCVRGG 509
G ++GGGS G+R + RG G RSG G G GG
Sbjct: 489 GFGREGGGSYGRRGSFGSSSSRGGGFGDSGFGRSGGGFGRSGGG 532
>07_01_0037 + 301864-302349
Length = 161
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -2
Query: 619 GGGSVGKRSCMSVTGYRGSVCLGHQRSGMGIGCVRGGVSNRGCMCG 482
GGG ++ G G C G GMG+G G G CG
Sbjct: 47 GGGEANAGGGCAIAG--GGGCRGGGGCGMGMGMAASGGGKEGYWCG 90
>05_07_0220 + 28482589-28483752
Length = 387
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 261 LRLPSTRATPRLPSPSQHPSLRPLRPQYLP 350
LRLP + P LP P Q P + P +P
Sbjct: 165 LRLPKEQTVPALPPPPQSPPAALMNPVAVP 194
>10_06_0172 + 11473892-11474896
Length = 334
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 589 MSVTGYRGSVCLGHQRSGMGIGCVRGGVSNRGCMCGISCEW 467
++V G+ S C H S G G V V + C C W
Sbjct: 169 VAVEGFCSSACGAHGSSAPGGGAVHVWVGDASAQCPGRCAW 209
>09_06_0115 + 20944586-20945185
Length = 199
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 559 CLGHQRSGMGIGCVRGGVSNRGCMCGISCEWCSM 458
C G +R+G+G G + GG + RG M G+ C +
Sbjct: 136 CGGSRRAGLGWGRMGGG-TGRGAMGGVPAGACGL 168
>08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802
Length = 914
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 616 GGSVGKRSCMSVTGYRGSVCLGHQRSGMGIGCVRGGVSNRGCMC 485
GG GK ++V GS G S G GCV G+SN+G C
Sbjct: 275 GGEEGKEG-LAVNAEAGSHASG---SSDGHGCVIRGISNQGNTC 314
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +3
Query: 270 PSTRATPR-LPSPSQHPSLRPLR---PQYLPFHPTLPR 371
PST PR SP PS P R P Y P PT PR
Sbjct: 105 PSTPTPPRRAASPDYTPSTPPPRAASPDYTPSTPTPPR 142
>02_03_0229 + 16617371-16617970
Length = 199
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 559 CLGHQRSGMGIGCVRGGVSNRGCMCGISCEWCSM 458
C G +R+G+G G + GG + RG M G+ C +
Sbjct: 136 CGGSRRAGLGWGRMGGG-TGRGAMGGVPAGACGL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,075,159
Number of Sequences: 37544
Number of extensions: 193087
Number of successful extensions: 1011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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