Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5455
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 148 7e-37
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 109 2e-25
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 102 3e-23
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 87 2e-18
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 83 4e-17
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 66 4e-12
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 56 3e-09
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 44 2e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 35 0.010
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 3.7
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 4.8
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 6.4
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 148 bits (358), Expect = 7e-37
Identities = 75/128 (58%), Positives = 86/128 (67%)
Frame = +2
Query: 206 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVI 385
+GPKVT V FD++ GD+ +G + IGLFGKTVPKT ENF LA +G GY+GS FHRVI
Sbjct: 21 RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80
Query: 386 KNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGISIFHHTW 565
NFMIQ +SIYG RF DENFKL H G LSMANAG D+NG S F T
Sbjct: 81 PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNG-SQFFITT 139
Query: 566 LKHPWLDG 589
+K PWLDG
Sbjct: 140 VKTPWLDG 147
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 109 bits (263), Expect = 2e-25
Identities = 59/119 (49%), Positives = 68/119 (57%)
Frame = +2
Query: 236 FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXX 415
FD+ +G IV LF VPKT NF L +G GY GS FHRVI FM+Q
Sbjct: 6 FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65
Query: 416 XXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGISIFHHTWLKHPWLDGQ 592
+SIYGE+F DENF LKH G LSMANAG +TNG S F T + PWLDG+
Sbjct: 66 TRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNG-SQFFITTVVTPWLDGK 123
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 102 bits (245), Expect = 3e-23
Identities = 63/126 (50%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Frame = +2
Query: 227 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG----YKGSKFHRVIKNF 394
K+S D KI TI LF VPKT +NF L E +G YKGS+FHRVIKNF
Sbjct: 8 KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNF 63
Query: 395 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGISIFHHTWLKH 574
M+Q SIYGE+FEDENF+LKH LSMANAG +TNG S F T +
Sbjct: 64 MLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNG-SQFFITTVPT 122
Query: 575 PWLDGQ 592
P LDG+
Sbjct: 123 PHLDGK 128
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 86.6 bits (205), Expect = 2e-18
Identities = 58/130 (44%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Frame = +2
Query: 230 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLA--------QKPEGEGYKGSKFHRVI 385
V D+ I +G I I LF VPKT ENF Q QKP G YK S FHR+I
Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64
Query: 386 KNFMIQXXXXXXXXXXXXRSIYGER-FEDENFKLKHYGAGWLSMANAGKDTNGISIFHHT 562
+ FMIQ +I+ R F DENF LKH G LSMANAGKD+NG F T
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFF-IT 123
Query: 563 WLKHPWLDGQ 592
+ +LDG+
Sbjct: 124 TVPCDFLDGK 133
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 82.6 bits (195), Expect = 4e-17
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Frame = +2
Query: 260 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 439
++G I+I L+ + PKT +NF+ LA+ EG Y G FHRVI +F+IQ
Sbjct: 9 SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGT 65
Query: 440 RSIYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGISIFHHTWLKHPWLDGQ 592
SIYG++F+DE + L H GAG LSMANAG +TN S F T PWLDG+
Sbjct: 66 -SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNS-SQFFITLAPTPWLDGK 115
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 66.1 bits (154), Expect = 4e-12
Identities = 46/110 (41%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Frame = +2
Query: 266 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 445
G I I L+ + PK +NF A E Y + FHR+IKNFMIQ S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQ-GGDPLGDGTGGES 519
Query: 446 IYGERFEDE-NFKLKHYGAGWLSMANAGKDTNGISIFHHTWLKHPWLDGQ 592
I+ + FEDE + LKH +SMAN+G +TNG F T L PWLDG+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLT-PWLDGK 568
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 56.4 bits (130), Expect = 3e-09
Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +2
Query: 260 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 439
N G I I L P NF QLA++ Y+ + FHR I FMIQ
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQGGDPSGTGRGG- 338
Query: 440 RSIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGISIF 553
+SI+G+ F+DE LKH G +SMAN GK+TNG F
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFF 377
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 43.6 bits (98), Expect = 2e-05
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +2
Query: 266 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 445
G I I L+ K VPK NF QL EG Y G+ HRV+ F+IQ S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQ-GGDPTGTGMGGES 77
Query: 446 IYGERFEDENF-KLKHYGAGWLSMANAGKDTNGISIF 553
IYGE F E +L+ G + MA + N F
Sbjct: 78 IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFF 114
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.010
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Frame = +2
Query: 254 DDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXX 433
+ +G +VI LF K PKT ENF +L + + Y F+ + N+ Q
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLCKL---KYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 434 XXRSIY-----GERFEDENF--KLKHYGAGWLSMANA 523
R ++ G RF F L H G +SM+ A
Sbjct: 63 GGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTA 99
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 126 SLVRFPCYFYKIRFECLFFQN 64
+LV P YFY R+ L FQN
Sbjct: 54 NLVNTPTYFYIQRYTALLFQN 74
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 442 APSSSITLGKITTLDHEIFNYSVELAPFVPLPLRFLS*LKEVLSCLRYSLS 290
+PSS + L K+ LDH + + S P P +++ K+ S L+ + S
Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 499 WLVIYG*CRQRHKWDLNFSSHLVKTPLV 582
W+ G C R +DL+ S KTPLV
Sbjct: 378 WIECVG-CADRSAYDLSVHSKATKTPLV 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,927
Number of Sequences: 5004
Number of extensions: 48140
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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