Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5454
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    82   2e-17
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   0.47 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   0.62 
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   1.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   1.9  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    24   4.4  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    24   4.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   4.4  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    24   4.4  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    24   5.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   5.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    23   7.7  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    23   7.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 81.8 bits (193), Expect = 2e-17
 Identities = 36/77 (46%), Positives = 56/77 (72%)
 Frame = +1

Query: 73  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 252
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 253 DNNPALEKLLPHMKGNV 303
           ++ P LE+LLP ++GNV
Sbjct: 68  NDMPELERLLPVVRGNV 84


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 269 RAGLLSRWSLMALRIIVFFPMSTILEPR 186
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 CSWEKTL*CAKPSKTTWTTIQPSRNCCHT*RATL 304
           CS EKT  C++  K+  T+ +PS  CC   ++T+
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTV 295


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 121 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 267
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 298 CPSCVATVSRGLDCCPGGL--*WLCAS*CFFP*ARYWSHVA 182
           CPS V +++  ++C  GG+   W   + C  P A   S +A
Sbjct: 63  CPSLVGSMAFSMNCGAGGMVWSWFVGATCLLPIAFALSELA 103


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 122 FGYSSKSWMILTK*LDFQVALSSLP 48
           F Y++K+W ++ K L  QV    +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 304 QRCPSCVATVSRGLDCC 254
           QRCP+C   V R   CC
Sbjct: 366 QRCPTCDRVVERIDGCC 382


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 114  LVQELDDLNEVVRLPSSLVLPTHPG 40
            L QE+  L   +RLP+ L  P++ G
Sbjct: 931  LTQEITQLGSNMRLPTKLTRPSNDG 955


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 305 PTLPFMCGNSFSRAGLLSRWSLMALRII 222
           PTLP +   + S +G+LSR + + ++ I
Sbjct: 49  PTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 300 VALHVWQQFLEGWIVVQVVFDGF 232
           VA+H +QQ  EG+ VV VVF+ +
Sbjct: 248 VAIH-FQQSKEGYEVVHVVFNDY 269


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 303 NVALHVWQQFLEGWIVVQVVF 241
           N  +  W +F +GW +  V F
Sbjct: 431 NTYIGRWHKFFQGWFITLVTF 451


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 2   LSLNFIEVPTPHYP 43
           L LN  E+PT HYP
Sbjct: 243 LKLNESEIPTYHYP 256


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +1

Query: 208 MGKNTMMRKAIKDHLD 255
           +GK+T++++ +KDH D
Sbjct: 29  VGKSTLLKRLLKDHGD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,415,151
Number of Sequences: 5004
Number of extensions: 25365
Number of successful extensions: 64
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)