Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5454
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 88 1e-18
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 87 2e-18
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 87 2e-18
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 35 0.014
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 33 0.033
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 2.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 2.2
03_01_0168 + 1382531-1383931,1384028-1384150 27 2.2
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 2.9
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 27 3.8
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 27 3.8
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 27 3.8
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 26 6.7
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 25 8.9
04_01_0404 - 5297341-5297970,5298304-5299179 25 8.9
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 25 8.9
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745... 25 8.9
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 87.8 bits (208), Expect = 1e-18
Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Frame = +1
Query: 52 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 231
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 232 KAIKDHLDN--NPALEKLLPHMKGNV 303
+ IK H DN N +L+P + GNV
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNV 89
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 87.4 bits (207), Expect = 2e-18
Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Frame = +1
Query: 52 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 231
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 232 KAIKDHLDN--NPALEKLLPHMKGNV 303
+ IK H DN N +L+P + GNV
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNV 89
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 87.4 bits (207), Expect = 2e-18
Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Frame = +1
Query: 52 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 231
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 232 KAIKDHLDN--NPALEKLLPHMKGNV 303
+ IK H DN N +L+P + GNV
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNV 89
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 34.7 bits (76), Expect = 0.014
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +1
Query: 10 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 189
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 190 GSS-IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHMKGN 300
SS I L GK M + D L KL ++G+
Sbjct: 63 SSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGD 101
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 33.5 bits (73), Expect = 0.033
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 22 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 198
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 199 IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHMKGN 300
I L GK M + D L KL ++G+
Sbjct: 203 IFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGD 237
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 115 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 204
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 73 KSNYFVKIIQLLDEYPKCF 129
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Frame = +2
Query: 182 RYVAPVSCSW---------EKTL*CAKPSKTTWTTIQPSRNCC 283
R VAPV C W ++ + KP W P RNCC
Sbjct: 433 RRVAPVKCGWRIPDPAALLDRVIVLKKPDPNLWKR-SPRRNCC 474
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 285 WQQFLEGWIVVQVVFDGFAHHSV 217
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 181 SLRGSSIVLMGKNT-MMRKAIKDHLDNNPALEKLL 282
SLR +I MG+NT ++ +A+KD+ N ALE LL
Sbjct: 700 SLRHVTIDYMGENTAVIEEALKDY-PNQAALELLL 733
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 201 RAHGKKHYDAQSHQRPPGQQSSPRETVA 284
R+H K+H A SH P +SP T A
Sbjct: 103 RSHKKRHPPAGSHPHRPNATASPDSTPA 130
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 157 QQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHMKG 297
+Q+Q IR +L + +L+ KNT++ KAI + P E L P MKG
Sbjct: 74 KQLQGIRDTLPETCRLLVAKNTLVGKAI----EGTP-WEALKPCMKG 115
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 25.8 bits (54), Expect = 6.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 291 HVWQQFLEGWIVVQVVFDGFAHH 223
++W+ + GW + F GFA H
Sbjct: 196 YLWELYYGGWAAPNIYFLGFAGH 218
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 11 NFIEVPTPHYPGW 49
N VP+P+YPGW
Sbjct: 215 NAFLVPSPYYPGW 227
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 205 LMGKNTMMRKAIKDHLDNNPALEKLLPHM 291
L+ + M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 163 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALE 273
M R+++RG V ++ + +KDHLD+ +E
Sbjct: 562 MNSCRLTMRGCRDVAQQMPDLVVEVMKDHLDDEGEME 598
>01_06_1468 +
37574124-37574180,37574275-37574346,37574437-37574513,
37574897-37574978,37576005-37576069,37576313-37576354,
37576452-37576503,37576631-37576679,37576784-37576797,
37576942-37577049,37577129-37577272,37577421-37577810
Length = 383
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 189 WLQYRAHGKKHYDAQSHQRPPGQQSSPRETVA 284
+LQY +H + D SH R P Q P ++
Sbjct: 74 YLQYSSHQELTTDQSSHGRNPDQAFKPSYNIS 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,688,906
Number of Sequences: 37544
Number of extensions: 185553
Number of successful extensions: 511
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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