Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5454
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   129   3e-31
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   0.48 
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   1.1  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   2.6  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   2.6  
Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    26   6.0  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    26   6.0  
AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine re...    25   7.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  129 bits (312), Expect = 3e-31
 Identities = 54/86 (62%), Positives = 73/86 (84%)
 Frame = +1

Query: 46  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 225
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 226 MRKAIKDHLDNNPALEKLLPHMKGNV 303
           +RKA++ HL  NP+LEKLLPH+  NV
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENV 86


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +1

Query: 19  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 198
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 199 IVLMGKNTMMRKAI 240
               GKN ++  A+
Sbjct: 65  RFFFGKNNVISIAL 78


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 1   LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 114
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 19  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 189
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339

Query: 190 GSSIVLMGKNTMMRKAIKD 246
           G    L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 19  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 189
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322

Query: 190 GSSIVLMGKNTMMRKAIKD 246
           G    L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341


>Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical
           protein F58G1.6 protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 174 PYLATWLQYRAHGKKHYDAQSHQRPPGQQSSPRETVATHE 293
           P+   +  +R HG   YD  S+QR   +   P+  +   E
Sbjct: 380 PFAPAYHMFRNHGPPKYDFNSNQRMMAESPPPQRFLKIEE 419


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 160 QMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLL 282
           +M   RI  RGS +   G+N   ++ ++ H   NP ++KLL
Sbjct: 240 EMDLQRIMERGS-LKHRGQNQKFKQMLEKHASRNPEVKKLL 279


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 189 WLQYRAHGKKHYDAQSHQRPPGQQSSPRETVATHEGQR 302
           ++Q + +GK  Y  +   +  GQ S+ +  V TH G+R
Sbjct: 497 YVQQQENGKTRYACKDCNKTFGQLSNLKVHVRTHTGER 534


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 201 RAHGK-KHYDAQSHQRPPGQQSSPRETVATHEGQR 302
           RAH + +H++   H  PP   +  R     H+G R
Sbjct: 62  RAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNR 96


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 201  RAHGK-KHYDAQSHQRPPGQQSSPRETVATHEGQR 302
            RAH + +H++   H  PP   +  R     H+G R
Sbjct: 906  RAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNR 940


>U40413-4|AAM51516.1|  699|Caenorhabditis elegans Hypothetical
           protein C18B2.5b protein.
          Length = 699

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 201 RAHGKK---HYDAQSHQRPPGQQSSPRETVATH 290
           R HG++   H+D  +++RP  + SSP    ++H
Sbjct: 272 RYHGEEINLHHDEVAYERPRSELSSPGSVYSSH 304


>U40413-3|AAK39176.1|  673|Caenorhabditis elegans Hypothetical
           protein C18B2.5a protein.
          Length = 673

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 201 RAHGKK---HYDAQSHQRPPGQQSSPRETVATH 290
           R HG++   H+D  +++RP  + SSP    ++H
Sbjct: 246 RYHGEEINLHHDEVAYERPRSELSSPGSVYSSH 278


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 141 GTHDETFWVLVQELDDLNEVVRLPSSLVL 55
           GTH  T W + ++   L  V RLP+  V+
Sbjct: 91  GTHSITIWNIEEDKRTLETVSRLPTEQVM 119


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 219 HYDAQSHQRPPGQQSSPRETVATH 290
           H+ + SH   PGQQ S   + ++H
Sbjct: 13  HHPSSSHHHHPGQQQSSSSSSSSH 36


>AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein28 protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 305 PTLPFMCGNSFSRAGLLSRWSLMALRI 225
           P L ++C N   R+GLL R  L  +RI
Sbjct: 290 PVLIYLCLNRTLRSGLLRRLGLRRVRI 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,791,314
Number of Sequences: 27780
Number of extensions: 142625
Number of successful extensions: 479
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)