Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5454
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   2.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 287 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 195
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 233


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 287 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 195
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 109


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 187 RGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHM 291
           RG + V +G N       K +     AL  L+PHM
Sbjct: 73  RGLTAVFLGLNLGFLAWAKHNPRGKDALWSLVPHM 107


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 70  WKSNYFVKIIQLLDEYP 120
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 205 LMGKNTMMRKAIKDHLDNNPALEKLLPH 288
           L GK+  + K IK  ++N    ++ LP+
Sbjct: 110 LGGKHKFISKKIKKTMENKDITKRPLPN 137


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 37  LSRMGREDKATW 72
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 37  LSRMGREDKATW 72
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 37  LSRMGREDKATW 72
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 300 VALHVWQQFLEG 265
           V +H W +F+EG
Sbjct: 241 VPVHRWYKFIEG 252


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 238 WLCAS*CFFP*ARYWSHV 185
           W+C+S   FP   +W  V
Sbjct: 171 WICSSAISFPAIVWWRAV 188


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +3

Query: 192 LQYRAHGKKHYDAQSHQRPPGQQSSPRETVATHEGQR 302
           LQ   H  +    Q H RP  QQ   ++     + +R
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEER 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,829
Number of Sequences: 438
Number of extensions: 1860
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)