Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5453
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   4.9  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   6.5  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 123 MIIGHLLYKLYFFNYFQFINLNTNTPSFI 37
           +I GH   +    N FQ + LN N P+F+
Sbjct: 116 LINGHRALQQNVQNLFQSVQLNINNPNFL 144


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = +2

Query: 215 YIHGDYNTWNLFICV*VLSN--------YNNTYVIYANIDEGK*YSICRFLFYLDHFFY 367
           Y  G +   NLF+ +  LS+        YN  Y ++AN+  G  ++     ++++H  Y
Sbjct: 95  YFIGAFCNQNLFLAIHELSHNLGFKKTLYNRAYCLFANLPVGAPFAASFRPYHMEHHAY 153


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 224 GDYNTWNLFICV*VLSNYN 280
           G Y TW+ F+   V+ NYN
Sbjct: 154 GKYMTWDSFVLANVVGNYN 172


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 182 DRAEGKVPSLNYIHGDYNTWNLFICV*VLSNYNNT 286
           D++ G +PS +    D+N  NLF    +   Y+NT
Sbjct: 73  DQSSGVIPSPSSFLSDHNNNNLFSDDTISRQYSNT 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,714
Number of Sequences: 5004
Number of extensions: 47022
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)