Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5453
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-2|AAO25975.1|  275|Caenorhabditis elegans Serpentine re...    29   1.9  
Z49910-3|CAA90121.1|  179|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>AC024780-2|AAO25975.1|  275|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 48 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 201 SLL*ITYMVITIRGTYLYVCRFYRIIIIHM*FMLIS 308
           S++   ++VI I  ++L+   FYR+I IH+  ++IS
Sbjct: 15  SIVLTAFLVIIITTSHLFQQSFYRLIAIHLVIVIIS 50


>Z49910-3|CAA90121.1|  179|Caenorhabditis elegans Hypothetical
           protein F44G4.5 protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 353 PNKIKTCKLNTTFLHRY*HKSHMYYYNSIKPTHI*IGSTYCNHHVCN 213
           P  I   K+  +FL +Y + S     NS+  T   + S Y +  +CN
Sbjct: 127 PQHIAVKKVEASFLPKYVNTSSEVAQNSVNTTPYFVNSEYVSEMLCN 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,066
Number of Sequences: 27780
Number of extensions: 247750
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)