Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5452
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    29   2.7  
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151...    27   6.3  
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    27   6.3  
01_04_0090 - 15940935-15941438                                         27   6.3  
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538...    27   8.3  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    27   8.3  
02_03_0411 - 18739279-18739902,18741471-18741671                       27   8.3  

>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 266 SINLVDLSYLARERFFYQYIFPVSLEHTTEVKELKIDDHN 147
           +I   +LSYL   + F+Q IFP ++ H   +  L +  +N
Sbjct: 389 NITFPNLSYLNLSKNFFQGIFPSAVSHLENLSTLDLSYNN 428


>06_03_0107 +
           16709543-16709640,16712555-16713408,16715051-16715193,
           16715312-16715573,16715835-16716150,16716257-16716383,
           16717088-16717149,16717291-16717374,16717438-16717494,
           16717705-16717768,16718057-16718152
          Length = 720

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 182 TEVKELKIDDHNCKVFEIIRRIIRNHKEPNERIQTID-LSTTGGLVLRETYT 30
           T +K++ +   NCKVF    R+IR     N R ++ D L +  G++L E  T
Sbjct: 319 TSLKDISVGQQNCKVF---GRLIRLWDAINMRSKSADPLISIDGILLDEHIT 367


>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 294 SKDLVRNISFYQFGRP--QLFSQREVFLPIHFPCKFGAHDG 178
           +K LVRN++F    +   QLFS       +  P KFG+H G
Sbjct: 781 TKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRG 821


>01_04_0090 - 15940935-15941438
          Length = 167

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 21  HYIGVRFSENETAGGAKIDRLNALVGLFVISNYAP 125
           HY  V + ++   G A++ R +A  G+F+I NY P
Sbjct: 124 HYTQVVWRDSTNVGCARV-RCDANRGIFIICNYEP 157


>10_07_0056 +
           12451510-12451554,12453099-12453149,12453754-12453804,
           12453879-12453944,12454011-12454072,12454459-12454537,
           12454618-12454722,12454824-12454934,12455017-12455154,
           12455298-12455399,12455400-12455474,12455574-12455694,
           12455768-12455922,12456004-12456078,12456160-12456363,
           12457105-12457221
          Length = 518

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 163 FNSLTSVVCSKLTGKMYW*KNLSL 234
           FNSL  + C+K  G MY    LSL
Sbjct: 418 FNSLEGITCNKTEGAMYLFPQLSL 441


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 382 CILWFTSKSRWTILTA*TYAVKNAIYITTFQRPRTK 275
           C+LW TS S  T+L A   A+   +   +F+ P  K
Sbjct: 154 CMLWLTSCSLLTVLWALLIAIFATLLHASFRTPNLK 189


>02_03_0411 - 18739279-18739902,18741471-18741671
          Length = 274

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 323 CQKCYLYHNVPKTSYEIYPSINLVDLSYLARERF 222
           C+ C++Y  VPKT+ ++ P      L +L+R  +
Sbjct: 241 CRACFMYFMVPKTA-DVCPKCGSSGLLHLSRNGY 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,667
Number of Sequences: 37544
Number of extensions: 264316
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)