Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5452
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   5.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   5.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.5  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 468 KKDYGAAHERFPMHH 424
           KKD+G   +++ +HH
Sbjct: 11  KKDFGTYFQQYCLHH 25


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 112 EITKSPTSAFKRSILAPPAVSFS 44
           EIT    S  K  I+APP   +S
Sbjct: 91  EITALAPSTMKIKIIAPPEKKYS 113


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 440 DSRCTTCNYRFKD 402
           DS+C+ C  RF++
Sbjct: 271 DSKCSLCQRRFEE 283


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 109 ITKSPTSAFKRSILAPPAVSFSEKRTPI 26
           + ++ T  F + +LA    SFS  R P+
Sbjct: 484 LQETRTPGFGKDVLATDERSFSGSRNPL 511


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 302 DIDSIFDSICLCGQNRPTAFRCEPQYTKTMRACCL*IYNC 421
           DI++IF    +   N+   ++ + +  K  R+  L  YNC
Sbjct: 657 DIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNC 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,641
Number of Sequences: 438
Number of extensions: 3026
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)