Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5450
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 339 LTSYSKNKIYFCLVESTLSDEMS*WYSR*RF-SNAALQFRSA 217
           +T Y+KN   FC  E  L+ + + + ++ +F S+A + F  A
Sbjct: 443 VTPYNKNYTKFCSTEKRLTKQNTAFENQLQFVSDAVMAFAYA 484


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 382 SKNSGPIRGIVTIPPFRTE 438
           S N G IR  +TI P RT+
Sbjct: 160 STNKGNIRSAITIFPQRTD 178


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 293 PPLVMKCLNGILAEDFLMPHYNFVAH 216
           PP++     G++ + FL+P    ++H
Sbjct: 846 PPVIGTPSTGMMYKPFLIPEQTSISH 871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,329
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)