Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5449
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    36   0.002
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    36   0.002
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    26   2.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   2.7  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   4.7  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    24   8.1  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    24   8.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    24   8.1  

>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 141 LIVNASNLEKFQLKIAQHELYEDGEILVEAILKDMATLPVLHAQQKEGGTQ-LKLIIDYP 317
           LI N++N    +L I  HELY DGEI    +L+ + T      Q  +  T  + L  D  
Sbjct: 14  LISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT------QSADDATWIINLTDDVL 67

Query: 318 NGVQALFKPMRFPRGCPDVSRTTFYFSD 401
           NG+  L K  R+   C   +  + Y  D
Sbjct: 68  NGLPLLKKRDRYTTQCHSTNMASTYDCD 95


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 141 LIVNASNLEKFQLKIAQHELYEDGEILVEAILKDMATLPVLHAQQKEGGTQ-LKLIIDYP 317
           LI N++N    +L I  HELY DGEI    +L+ + T      Q  +  T  + L  D  
Sbjct: 14  LISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT------QSADDATWIINLTDDVL 67

Query: 318 NGVQALFKPMRFPRGCPDVSRTTFYFSD 401
           NG+  L K  R+   C   +  + Y  D
Sbjct: 68  NGLPLLKKRDRYTTQCHSTNMASTYDCD 95


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 131 LHLPNSGILGPQN--IQVLGAEV*PLHYR 51
           LH+PN   LGP +  ++V+   + PL Y+
Sbjct: 33  LHIPNPAELGPYDVLVEVVATSINPLDYK 61


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 395 EIEGGSGNVWTSTGESHWFKECLNSVW 315
           E E GSG +W    E+++++   NS W
Sbjct: 912 EDEDGSGPIWQLKKENNYWESRENSTW 938


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 LRPKSLHPRIVHAERSSAETSRD*MR 151
           +R  SLHP++    R S +TSR   R
Sbjct: 872 IRNDSLHPKVGPPRRQSTDTSRSTFR 897


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 141 LIVNASNLEKFQLKIAQHELYEDGEILVEAI 233
           ++VN  +    +L+I+Q ELY++   +VE++
Sbjct: 155 VVVNKVDRALLELQISQEELYQNFARVVESV 185


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 141 LIVNASNLEKFQLKIAQHELYEDGEILVEAI 233
           ++VN  +    +L+I+Q ELY++   +VE++
Sbjct: 155 VVVNKVDRALLELQISQEELYQNFARVVESV 185


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  NKSCSLSYRGPPSIMQWSYLRTENLNVLR 101
           NKS S  ++ PP      Y R +NL  +R
Sbjct: 365 NKSNSYFFQNPPKSNSVDYTRLDNLEHMR 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,154
Number of Sequences: 5004
Number of extensions: 33651
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)