Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5449
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0695 + 27318827-27320047 28 2.6
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 28 3.4
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 4.5
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 27 5.9
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 27 5.9
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 27 5.9
01_05_0626 + 23797278-23797618,23797629-23798097 27 5.9
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851... 27 7.8
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 27 7.8
>04_04_0695 + 27318827-27320047
Length = 406
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 243 MATLPVLHAQQKEGGTQLKLIIDYPNGVQALFKPMRFPRGCPDVSRTTFYFSDY 404
+++L HA+ EG T L + + L PMRFPRG + + + ++
Sbjct: 175 ISSLQRRHAEAIEGATYRALSRAPSSSIAPLAFPMRFPRGYGGMKKVKAWMDEF 228
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 116 YWGDGGFITYCQRI*SREVSAEDRSA*TIR-GWRDFGR 226
+W + GF TY +R V E+R+A + GWR R
Sbjct: 324 FWLNEGFTTYAERRIVEVVQGEERAALNMGIGWRGLNR 361
>04_04_1571 +
34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 198 LYEDG-EILVEAILKDMATLPVLHAQQKEGGT 290
LYE+ ILVE I K + T PV H++ K GGT
Sbjct: 447 LYEEPWSILVEQICKFIYTSPVFHSEIK-GGT 477
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 117 IGEMEDL*LIVNASNLEKFQLKIAQHELYEDGEILVEAILKDMATLPVLHAQQKE 281
+ ++E+ L+ N +NL+ ++ ELYE +I + A + + A L V + K+
Sbjct: 1197 LSDIEEFILMPNVANLQNVGDRLYDEELYEAAKI-IYAFISNWAKLAVTLVKLKQ 1250
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 117 IGEMEDL*LIVNASNLEKFQLKIAQHELYEDGEILVEAILKDMATLPVLHAQQKE 281
+ ++E+ L+ N +NL+ ++ ELYE +I + A + + A L V + K+
Sbjct: 1197 LSDIEEFILMPNVANLQNVGDRLYDEELYEAAKI-IYAFISNWAKLAVTLVKLKQ 1250
>01_06_0393 + 28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +2
Query: 209 WRDFGRSYFKRYGHPA--RVTRTTKGRRNAAQTH 304
WR+ FK+Y HP + T T G N + H
Sbjct: 1136 WRENQERVFKKYSHPTVPQTTSTKTGSSNEEEHH 1169
>01_05_0626 + 23797278-23797618,23797629-23798097
Length = 269
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -3
Query: 413 CRLVIREIEGGSGNVWTSTGESHWFKECLNSVWIVYYEFELRSAFLLL 270
C L +IE + V G HW K + + ++++ F+ + L+L
Sbjct: 137 CHLPWVDIEARASPVAPHDGNKHWLKPGMQANGLIFWPFKNKEHMLVL 184
>09_04_0701 +
19583386-19583554,19584290-19584441,19585123-19585181,
19585319-19585344,19585407-19585758,19586184-19586667
Length = 413
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -3
Query: 380 SGNVWTSTGESHWFKECLNSVWIVYYEFELRSAFLLLCV*HGQGG 246
S W TGE HW+ Y F RSA LL + Q G
Sbjct: 362 SETFWPQTGEPHWWSPMAPVHNRSYDNFSGRSATELLSIYGAQNG 406
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 74 PHREPECFEARESHYWGDGGFI 139
PH EP A SH G GGF+
Sbjct: 203 PHEEPCMLPANASHQVGVGGFV 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,261
Number of Sequences: 37544
Number of extensions: 240162
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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