Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5449
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical pr...    64   3e-11
AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical ...    34   0.047
AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical ...    30   0.76 
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    30   0.76 
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical
           protein H03A11.1 protein.
          Length = 512

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/83 (37%), Positives = 48/83 (57%)
 Frame = +3

Query: 159 NLEKFQLKIAQHELYEDGEILVEAILKDMATLPVLHAQQKEGGTQLKLIIDYPNGVQALF 338
           N E+F   I    +Y D + +++ +L D+ T P+ H    +GGTQ+K +  + N  QA+F
Sbjct: 133 NWERFYSNIGSCSVYSDDQ-MIDNLLHDLNTSPIKHVHIMDGGTQVKFVFTFKNDKQAVF 191

Query: 339 KPMRFPRGCPDVSRTTFYFSDYQ 407
           KPMRF R   +     FYFSD++
Sbjct: 192 KPMRFGRDY-ESDPNHFYFSDFE 213


>AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical
           protein F43C11.9 protein.
          Length = 339

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +3

Query: 69  YLRTENLNVLRPENPTIGEMEDL*LIVNASNLEKFQLKIAQHELYEDGEILVEAILKDMA 248
           YL T +  VL  E   +   E +  I N   ++ FQL +A+H ++ D  + +  I K + 
Sbjct: 81  YLITNDKTVLERERVQVNNGEKMLAICNMDFMDDFQLGLAKHYIFLDFPLKIIGIKKMLD 140

Query: 249 TLPVLHAQQKE 281
            L  + AQQ E
Sbjct: 141 RLNTM-AQQSE 150


>AF036706-7|AAK39282.1|  562|Caenorhabditis elegans Hypothetical
           protein T07A9.10 protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +3

Query: 90  NVLRPEN--PTIGEMEDL*LIVNASNLEKFQLKIAQHELYEDGEILVEAILKDMATLPVL 263
           N+LRP+N    +G  +   L+++ S +      ++ +E++E+G  LVE + ++   +P +
Sbjct: 13  NILRPQNYDSKLGHRKFSVLVLDKSAMVVVNSCLSLNEVFEEGVTLVEDLTRNREPMPSM 72

Query: 264 HA 269
            A
Sbjct: 73  DA 74


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 276 KEGGTQLKLIIDYPNGVQALFKPMRFPRGCPDVSRTTFYFSDYQT 410
           K   T  K+ +DYPN   +LF P RF +    V  T  Y    QT
Sbjct: 46  KTWSTNNKITVDYPNRFTSLFTPKRFYKENCIVIETKVYSHFNQT 90


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 276 KEGGTQLKLIIDYPNGVQALFKPMRFPRGCPDVSRTTFYFSDYQT 410
           K   T  K+ +DYPN   +LF P R+ +    V  T  Y    QT
Sbjct: 46  KTWSTNNKITVDYPNRFTSLFTPKRYYKENCIVIETKVYSHFNQT 90


>Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 YPNGVQALFKPMRFPRGCPDVSRTTFYFSDYQTA 413
           YPN +  LF P +FPR C     T  Y+S  +++
Sbjct: 351 YPNVL--LFNPQKFPRNCVHPFTTHPYYSPKESS 382


>AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 YPNGVQALFKPMRFPRGCPDVSRTTFYFSDYQTA 413
           YPN +  LF P +FPR C     T  Y+S  +++
Sbjct: 351 YPNVL--LFNPQKFPRNCVHPFTTHPYYSPKESS 382


>Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical
           protein C03E10.6 protein.
          Length = 252

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 172 NFSRLDALTISYKSSISPIVGFSGLKTFRFSVRRYDHC 59
           N++   A+   +KSS+S ++  + +       RR D C
Sbjct: 131 NYTEFKAVYDKFKSSLSSVINVNKMPMILIGARRKDEC 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,154,613
Number of Sequences: 27780
Number of extensions: 193077
Number of successful extensions: 451
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)