Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5449
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 270 QQKEGGTQLKLIIDYPNGVQALFKP 344
           QQ+ GG +  L+  +  G  ALF P
Sbjct: 42  QQRRGGLEYFLLSAFLFGANALFTP 66


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 51  SIMQWSYLRTENLNVLRPENPTIGEMEDL*LIVNASNL 164
           SIM   Y R  N N+ R E     E EDL  +    NL
Sbjct: 239 SIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNL 276


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 9   TYNKSCSLSYRGP 47
           TY ++  L YRGP
Sbjct: 421 TYGRNAGLRYRGP 433



 Score = 21.0 bits (42), Expect = 5.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 291 AFRLPFVVRVTRAGWPYLLK*LRPKSLHPRIVHAERSSAETSR 163
           +FR+  V      G    L+   PK   P+++HA R  A   R
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILR 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,079
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)