Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5447
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 36 0.004
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.66
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 1.5
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.0
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 2.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 6.1
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 8.1
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 8.1
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.1
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 8.1
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 8.1
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 35.5 bits (78), Expect = 0.004
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = +3
Query: 78 SPSMISLFCLYGYSLSIYIPVA-------IFWTIQISWLQWLFVLMAAFVSGAVLIFWLL 236
+P ++ CLYGY+ +++PV+ + T+ ++++ + +S L L
Sbjct: 155 NPKLLDCLCLYGYANIVWLPVSLATPPFGLLSTLASHIVKYVLTGIGLLISIVFLTRNLY 214
Query: 237 PALKK--SKYFYMLVGSILAFHFLLATGFMLYFF 332
P ++ S +L+ I+ FH LLA L FF
Sbjct: 215 PICQQAGSNLCKLLLFGIIVFHCLLALSLQLIFF 248
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 0.66
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 LYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAF-VSGAVLIFWLLP 239
+Y + Y+P WTI + +W+F ++A+F + ++ I W+ P
Sbjct: 113 IYSPHIKDYLP----WTISCTKNEWVFDMLASFSIENSLRIKWVAP 154
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +2
Query: 362 RASDTVSGYCCCSSIICNF------SKTFTYIMNN 448
+ASD S YC C I+ F + T+T ++NN
Sbjct: 267 QASDMASTYCACKVIVYQFFLRIPETDTYTLVVNN 301
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +2
Query: 362 RASDTVSGYCCCSSIICNF------SKTFTYIMNN 448
+ASD S YC C I+ F + T+T ++NN
Sbjct: 267 QASDMASTYCACKVIVYQFFLRIPETDTYTLVVNN 301
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 278 IYSCFSFLV-GNWFYVI---LLSRTKRSKRSWRASDTVSGYCCCSSII 409
I +C SF++ G + I + +T+ S R WR DT+SG ++ +
Sbjct: 68 IVACGSFIITGGIEFAIAYGMYKKTETSVRLWRLPDTLSGDAAVTNFV 115
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 2.7
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +3
Query: 81 PSMISLFCLY-GYSLSIYIPVAIFWTIQIS-W--LQWL-FVL---MAAFVSGAVLIFWLL 236
P + LY + +++ IP+ + W + +S W L WL FVL + FV G + +
Sbjct: 89 PGIFVFLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTFVLSWIILPFVQGYMESKFST 148
Query: 237 PALKKSKYFYMLVGSILAFHFL 302
P + S FY + L FL
Sbjct: 149 PRSRLSDSFYKNLRYYLLLTFL 170
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 293 SFLVGNWFYVILLSRTKRSKRSW 361
SFLVG W + + R +K +W
Sbjct: 1199 SFLVGAWLIIFYVLRKLSNKHTW 1221
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 101 EERYHRWRV*GLRLNLILSIGKRSPFQD 18
+ER HRWR G N ++ I + ++D
Sbjct: 8 DERIHRWRCLGSEGNELIYIDEEQTWKD 35
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 8.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 171 LQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFLLA-TGFMLYFFHGP 341
+ W F F+ A+ +F+ +LKK YF + L H LL T F + P
Sbjct: 223 MHWNFFFTLGFM--ALGVFFFRRSLKKVSYFNLATFITLLHHCLLVLTPFQKWALSAP 278
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 123 SIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFW 230
S +IP+A+FW + W + V AA + + + W
Sbjct: 425 SFFIPIALFW---LGWTCYPSVHWAAPMVSGIFLGW 457
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 8.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = +3
Query: 105 LYGYSLSIYIPVAIFWTIQISWLQWLF 185
L+ + +Y ++ W + +S+ +WLF
Sbjct: 4 LFNFWRIMYANISSIWLLVVSFFEWLF 30
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 256 SIFICLSDLFLLFISCWQLVLCYTSFT 336
S +IC +FLLF + CY S T
Sbjct: 92 SFYICYFSIFLLFFAISFQAECYYSLT 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,546
Number of Sequences: 5004
Number of extensions: 40460
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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