Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5447
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    75   2e-14
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    75   2e-14
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    75   2e-14
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    31   0.59 
U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    27   9.7  
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    27   9.7  

>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 190 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 249

Query: 270 LVG---SILAFHFLLATGFMLYFF 332
             G   S++  HFLLA  F +YFF
Sbjct: 250 AFGTVISVVVLHFLLAFTFKVYFF 273


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 270 LVG---SILAFHFLLATGFMLYFF 332
             G   S++  HFLLA  F +YFF
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFF 263


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 270 LVG---SILAFHFLLATGFMLYFF 332
             G   S++  HFLLA  F +YFF
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFF 263


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 138 VAIFWTIQISWLQWLFVLMAAFVSGAV--LIFWLLPALKKSKYFYMLVGSILAFHFLLAT 311
           V + +T+ ++ L + ++L++   +  +  L FWL+ A         L+  +++F  +LAT
Sbjct: 51  VDVVYTLNLTTLMFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERVLAT 110

Query: 312 GFMLYF 329
            F +YF
Sbjct: 111 YFPIYF 116


>U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical
           protein R12C12.9a protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 WLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 205 WLDILFIAYISGHILVFLSLPFFNKKLF 232


>U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical
           protein R12C12.9b protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 WLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 200 WLDILFIAYISGHILVFLSLPFFNKKLF 227


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +3

Query: 165 SWLQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           +W +W++++ A  + G+V++FWL    +KS +
Sbjct: 461 NW-RWIWLVFAVLLIGSVILFWLTFQFEKSDW 491


>U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical
           protein ZK180.7 protein.
          Length = 173

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 338 TKRSKRSWRASDTVSGYCCCSSIICN 415
           TK   +S   S   S +CCCS+ +CN
Sbjct: 99  TKHHAKSNTNSIRFSEFCCCSTNLCN 124


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 247 RNQSIFICLSDLFLLFISCWQLVLCYTSFT 336
           RN+S+   + +LF+L +SC  +V+C TS T
Sbjct: 54  RNKSLQT-VPNLFILSLSCSDIVVCCTSAT 82


>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 335 RTKRSKRSWRASDTVSGYCCCSSIICNFSKTFTYIMN 445
           RT R ++SW    +      C+S+    S  F +IMN
Sbjct: 487 RTPRQEQSWSKGHSPCSQAECNSLKSGVSDLFPWIMN 523


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 335 RTKRSKRSWRASDTVSGYCCCSSIICNFSKTFTYIMN 445
           RT R ++SW    +      C+S+    S  F +IMN
Sbjct: 487 RTPRQEQSWSKGHSPCSQAECNSLKSGVSDLFPWIMN 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,752
Number of Sequences: 27780
Number of extensions: 225942
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)