Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5446
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-1|AAC68718.1|  160|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    29   3.3  
Z67755-9|CAM33504.2|  224|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    28   5.8  
AL023828-11|CAA19453.1|  344|Caenorhabditis elegans Hypothetical...    28   7.6  
AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF098997-1|AAC68718.1|  160|Caenorhabditis elegans Hypothetical
           protein T10D4.7 protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 203 YIIPSNPGSSTTYTEYDLYQFLGILLYMS---VQKYPSKRSY 319
           Y++P N    +T T  D++ F GI+   S   + KYP+  SY
Sbjct: 87  YLMPPNATPGSTPTGIDIFSFFGIICENSTWYITKYPNGYSY 128


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 4   FYCLEGGRAHSPPGVKWLLEPIDIHNVNAP 93
           +YCL      SP   KWL EPI  H+ +AP
Sbjct: 615 YYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>Z67755-9|CAM33504.2|  224|Caenorhabditis elegans Hypothetical
           protein F54F7.9 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 576 TYLISPIDGVLNCMCFAISPSRTMPTNLRY 665
           TY++S IDG  N  CF+ SP+ T    L+Y
Sbjct: 74  TYMLSMIDGFKNATCFS-SPACTEVKVLKY 102


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 161 TKYFINSLVEQTNLYIIPSNPGSSTTYTEYDLYQFLGILLY 283
           +KYF N L ++  ++ IP      TT+ ++ L  F+G+LL+
Sbjct: 56  SKYFANEL-QKIEIFQIPMIDMFLTTHLDFTLCFFVGLLLF 95


>AL023828-11|CAA19453.1|  344|Caenorhabditis elegans Hypothetical
           protein Y17G7B.8 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 239 YTEYDLYQFLGILLYMS-VQKYPSKRSYWSPRFGYDPISSTMPQNKFEKIKLLLHFNNNE 415
           +  +  Y  +  ++YM+ +   P KRS+W P F + P++  + +  F + ++   F N+ 
Sbjct: 221 FEHFTAYDEIEPVMYMARILSRPMKRSHWFPGF-HVPVAERLFRQIFRQ-EMFEKFENHS 278

Query: 416 LHK 424
           + K
Sbjct: 279 IRK 281


>AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical
           protein T25D3.3 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 437 PEHDRLFKIRIVIQQFNERFAT-VPMNQRLSVDEQMCSTKIGHFLNQY 577
           P+     K+R + +Q  E F   VP++ RL + EQ+  +  G F+NQ+
Sbjct: 145 PDTIEQVKVRRIEEQ--EGFVVRVPISDRLIIAEQLAKSTGGFFMNQF 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,603
Number of Sequences: 27780
Number of extensions: 360097
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)