Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5444
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   0.66 
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   2.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   4.6  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   4.6  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   6.1  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 153 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 278
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 177 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 287
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 279 RCEGSRSSRSS-IWNLWRRKRDRYRRFSVRLHR 184
           RC+G +S  +  I++ WR   D YR  SV L R
Sbjct: 401 RCQGHKSWVTDVIFDAWRCDDDNYRIASVGLDR 433


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 352 FPDENKCDVFWNCW 393
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 306 EAVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSV 196
           E +S L  +RCE + SSR       R  + +++ F V
Sbjct: 262 EVISQLIDRRCESATSSRQGFGLERRTNQSQFQHFVV 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,445
Number of Sequences: 5004
Number of extensions: 36142
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)