Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5444
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    33   0.093
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    31   0.38 
12_02_0589 + 20850249-20850491,20850583-20851839                       31   0.50 
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88...    29   2.6  
03_05_0285 - 22748738-22749019                                         29   2.6  
02_02_0183 + 7576901-7576908,7577666-7578176                           28   3.5  
03_03_0072 + 14266286-14266552,14266860-14266964,14267063-142671...    27   6.1  
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253...    27   8.1  

>02_05_1170 +
           34663853-34663928,34664038-34664078,34664317-34664386,
           34664499-34664647,34664784-34664879,34665406-34665476,
           34665637-34665698,34665778-34665841,34665950-34666034,
           34666129-34666255,34666381-34666454,34666539-34666599,
           34666683-34666771,34666897-34667206,34667763-34667815,
           34668299-34668370,34668648-34668914,34669015-34669047,
           34669163-34669245,34669522-34669594,34669834-34670170,
           34670302-34670633,34670816-34671135,34671261-34671612,
           34671691-34671906
          Length = 1170

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -3

Query: 485 TPEPDQPTCRRGTLCRRQVRGCTDSGRA-SPF-QQFQKTSHLF-SSGKMPYSLEQWGVEI 315
           T E  + + R G+  RR V   +  G +  P  QQ+ +TS LF SSG  P S ++    +
Sbjct: 366 TVERPRTSSRTGSASRRAVASSSRPGSSVEPMEQQYSRTSRLFSSSGSRPSSTQRVNPSV 425

Query: 314 GGSKLCPLSALNVVK 270
           G ++   LS   V +
Sbjct: 426 GETRATSLSRAAVAR 440


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 23  TLVPGLSSQYEFEVFISVSGRPR--RSCRPRVLQMPRRLRFLPSPHLL 160
           TL+  L+S   F+    ++GR      C PR  + PR L +L SPH+L
Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371


>12_02_0589 + 20850249-20850491,20850583-20851839
          Length = 499

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 303 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 166
           A SSL T     S S R ++  +WR+ R+ +R+FS   ++C  +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313


>11_01_0113 +
           881806-881996,882831-882921,883140-883255,884489-885260
          Length = 389

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 288 RTQRCEGSRSSRSSIWNLWRRKRDR 214
           R  RC G  ++RS+   LWRR+R R
Sbjct: 20  RVSRCSGRPATRSAPSILWRRRRPR 44


>03_05_0285 - 22748738-22749019
          Length = 93

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 292 RGHSFEPPISTPHCSRLYG 348
           RG  F PPI T HC  L G
Sbjct: 22  RGWGFSPPIRTSHCGELTG 40


>02_02_0183 + 7576901-7576908,7577666-7578176
          Length = 172

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 327 GSGDWGLEAVSSLRTQRCEGSRSSRSSIWNLWRRKR 220
           G G  G   V  +  +R EG  S   + W  WRR+R
Sbjct: 103 GGGGGGGGGVGWMGMRRAEGGGSGSVARWRRWRRRR 138


>03_03_0072 +
           14266286-14266552,14266860-14266964,14267063-14267110,
           14267851-14268099
          Length = 222

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
 Frame = +3

Query: 105 QESFKCPDDFGFYPHH---ISCD----KYWKCDNGVAELKTCGNGLAFD---ATDSKYLT 254
           + +F+CPD+ G+ P     +S D       K    V E+      + FD   + D+    
Sbjct: 110 EATFRCPDELGWKPQRAPIVSSDGSISNLRKTTVPVNEVNKSLQQMGFDVAPSDDAGRFV 169

Query: 255 ENCDYLHNVECGERTQLRAPNLHSPLFETV 344
            N  Y  ++   E+  +++  +H PLF T+
Sbjct: 170 CNYVYYQSLRFAEQRGIKSLFVHFPLFTTI 199


>10_01_0001 -
           22485-22526,23308-23436,24346-24473,24801-24862,
           25388-25585,25807-25898,26941-26994
          Length = 234

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 171 WKCDNGVAELKTCGNGLAFDATDSKYLTEN-CDYLHNVECGERTQLRAPNLHSP 329
           W C  G  E   CG   +  A     ++ + C Y +   CG   +L+ P+  SP
Sbjct: 9   WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPPSSPSP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,506,267
Number of Sequences: 37544
Number of extensions: 282156
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)